Name: Gemmata massiliana IIL30
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131409

Type strain:

Species: Gemmata massiliana

Strain Designation: IIL30

Culture col. no.: DSM 26013, CSUR P189

Strain history: <- R. Aghnatios, Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, Unité des Rickettsies, Marseille, France; IIL30

NCBI tax ID(s): 1210884 (species)

SI-ID 401444

DSM 26013

Section

Gemmata massiliana IIL30 is a mesophilic bacterium that was isolated from hospital water.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Planctomycetota*
	Class	*Planctomycetia*
	Order	*Gemmatales*
	Family	*Gemmataceae*
	Genus	*Gemmata*
	Species	**Gemmata massiliana**
	Full Scientific Name (LPSN)	Gemmata massiliana Aghnatios et al. 2023

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22636]

Culture medium

CAULOBACTER MEDIUM (DSMZ Medium 595)

[Ref.: #22636]

Culture medium growth

[Ref.: #22636]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22636]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22636]			growth	28 °C

[Ref.: #22636]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22636]	Sample type/isolated from	hospital water
[Ref.: #22636]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #22636]	Country	France
[Ref.: #22636]	Country ISO 3 Code	FRA
[Ref.: #22636]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Medical environment	#Clinic
#Environmental	#Aquatic	#Freshwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX088244 (>99% sequence identity) for Gemmata massiliana subclade from Microbeatlas

Aquatic Samples	687
Soil Samples	1534
Animal Samples	86
Plant Samples	109
Total Samples	2416

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22636]	Gemmata massiliana strain IIL30 16S ribosomal RNA gene, partial sequence	JX088244	1489	ENA	1210884 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gemmata massiliana IIL30	GCA_000531095	scaffold	GenBank	1210884 tax ID	*
[Ref.: #66792]	Gemmata massiliana IIL30	2600255093	draft	JGI IMG/M	1210884 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gemmata massiliana IIL30 NCBI: GCA_000531095.1
[Ref.: #69480]	motile	yes	61.711	no
[Ref.: #69480]	flagellated	no	88.686	no
[Ref.: #69480]	gram-positive	no	93.934	no
[Ref.: #69480]	anaerobic	no	96.862	no
[Ref.: #69480]	halophile	no	95.26	no
[Ref.: #69480]	spore-forming	no	84.423	no
[Ref.: #69480]	thermophile	no	98.719	yes
[Ref.: #69480]	glucose-util	yes	81.84	no
[Ref.: #69480]	aerobic	yes	82.613	no
[Ref.: #69480]	glucose-ferment	no	88.002	no

Availability in culture collections External links

[Ref.: #22636]

Culture collection no.

DSM 26013, CSUR P189

[Ref.: #89839]

SI-ID 401444

Literature:

Topic	Title	Authors	Journal	DOI	Year
Cultivation	Improved culture of fastidious Gemmata spp. bacteria using marine sponge skeletons.	Kabore OD, Godreuil S, Drancourt M	Sci Rep	10.1038/s41598-019-48293-z	2019	*
Phylogeny	Fimbriiglobus ruber gen. nov., sp. nov., a Gemmata-like planctomycete from Sphagnum peat bog and the proposal of Gemmataceae fam. nov.	Kulichevskaya IS, Ivanova AA, Baulina OI, Rijpstra WIC, Sinninghe Damste JS, Dedysh SN	Int J Syst Evol Microbiol	10.1099/ijsem.0.001598	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22636

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26013

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89839

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401444.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Gemmata massiliana in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF