Name: Thermus amyloliquefaciens DSM 25898
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131403

Type strain:

Species: Thermus amyloliquefaciens

Culture col. no.: DSM 25898, KCTC 32024, YIM 77409

Strain history: <- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM 77409 <- T.-T. Yu

NCBI tax ID(s): 1449080 (species)

SI-ID 399350

DSM 25898

Section

Thermus amyloliquefaciens DSM 25898 is a thermophilic, Gram-negative bacterium that was isolated from hot spring sediment.

Gram-negative
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Thermales*
	Family	*Thermaceae*
	Genus	*Thermus*
	Species	**Thermus amyloliquefaciens**
	Full Scientific Name (LPSN)	Thermus amyloliquefaciens Yu et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.99

[Ref.: #22630]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22630]

Culture medium

THERMUS MEDIUM (DSMZ Medium 1722)

[Ref.: #22630]

Culture medium growth

[Ref.: #22630]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22630]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22630]			growth	65 °C

[Ref.: #22630]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.877

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22630]	Sample type/isolated from	hot spring sediment
[Ref.: #22630]	Geographic location (country and/or sea, region)	Yunnan Province, Eryuan county of Dali
[Ref.: #22630]	Country	China
[Ref.: #22630]	Country ISO 3 Code	CHN
[Ref.: #22630]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP284528 (>99% sequence identity) for Thermus amyloliquefaciens subclade from Microbeatlas

Aquatic Samples	428
Soil Samples	127
Animal Samples	1593
Plant Samples	54
Total Samples	2202

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22630]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22630]	Thermus amyloliquefaciens strain YIM 77409 16S ribosomal RNA gene, partial sequence	KP284528	1518	ENA	1449080 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermus amyloliquefaciens YIM 77409	GCA_000744885	contig	GenBank	1449080 tax ID	*
[Ref.: #66792]	Thermus sp. YIM 77409	1449080.3	wgs	PATRIC	1449080 tax ID	*
[Ref.: #66792]	Thermus amyloliquefaciens YIM 77409	2579778517	draft	JGI IMG/M	1449080 tax ID	*

[Ref.: #22630]

GC-content

66.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermus sp. YIM 77409 PATRIC: 1449080.3
[Ref.: #69481]	spore-forming	no	88	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermus sp. YIM 77409 PATRIC: 1449080.3
[Ref.: #69480]	motile	no	87.762	no
[Ref.: #69480]	gram-positive	no	95.078	no
[Ref.: #69480]	anaerobic	no	96.185	no
[Ref.: #69480]	halophile	no	86.991	no
[Ref.: #69480]	spore-forming	no	95.172	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-util	yes	86.326	no
[Ref.: #69480]	aerobic	yes	74.029	no
[Ref.: #69480]	flagellated	no	97.974	no
[Ref.: #69480]	glucose-ferment	no	86.392	no

Availability in culture collections External links

[Ref.: #22630]

Culture collection no.

DSM 25898, KCTC 32024, YIM 77409

[Ref.: #89836]

SI-ID 399350

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway.	Zhou EM, Murugapiran SK, Mefferd CC, Liu L, Xian WD, Yin YR, Ming H, Yu TT, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Spunde A, Kyrpides N, Woyke T, Li WJ, Hedlund BP	Stand Genomic Sci	10.1186/s40793-016-0140-3	2016	*
Phylogeny	Thermus amyloliquefaciens sp. nov., isolated from a hot spring sediment sample.	Yu TT, Ming H, Yao JC, Zhou EM, Park DJ, Hozzein WN, Kim CJ, Wadaan MAM, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000289	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22630

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25898

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89836

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399350.1 )

* These data were automatically processed and therefore are not curated

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Thermus sp. YIM 77409

Thermus sp. YIM 77409

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