Name: Phytoactinopolyspora endophytica DSM 46804
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131400

Type strain:

Species: Phytoactinopolyspora endophytica

Culture col. no.: DSM 46804, CPCC 204078, KCTC 29657, EGI 60009, JCM 31493

Strain history: <- Wenjun Li

NCBI tax ID(s): 1642495 (species)

SI-ID 401679

DSM 46804

Section

Phytoactinopolyspora endophytica DSM 46804 is an aerobe, mesophilic bacterium that was isolated from surface-sterilized healthy root of Glycyrrhiza uralensis F..

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Jiangellales*
	Family	*Jiangellaceae*
	Genus	*Phytoactinopolyspora*
	Species	**Phytoactinopolyspora endophytica**
	Full Scientific Name (LPSN)	Phytoactinopolyspora endophytica Li et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %95.909

Multimedia content

[Ref.: #22627]

Caption:

Medium 830 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22627]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #22627]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #22627]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22627]	Sample type/isolated from	surface-sterilized healthy root of Glycyrrhiza uralensis F.
[Ref.: #22627]	Host species	Glycyrrhiza uralensis
[Ref.: #22627]	Geographic location (country and/or sea, region)	Xinjiang Province, Yili County
[Ref.: #22627]	Country	China
[Ref.: #22627]	Country ISO 3 Code	CHN
[Ref.: #22627]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Roots of Glycyrrhiza uralensis (Chinese licorice) from Xinjiang Province
[Ref.: #67770]	Host species	Glycyrrhiza uralensis
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	from the roots of Glycyrrhiza uralensis F
[Ref.: #67771]	Geographic location (country and/or sea, region)	collected from Xinjiang Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22627]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22627]	Phytoactinopolyspora endophytica strain EGI 60009 16S ribosomal RNA gene, partial sequence	KP271925	1514	ENA	1642495 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Phytoactinopolyspora endophytica EGI 60009	GCA_004138495	scaffold	GenBank	1642495 tax ID

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GC-content

70.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Phytoactinopolyspora endophytica EGI 60009 NCBI: GCA_004138495.1
[Ref.: #69481]	spore-forming	yes	70	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Phytoactinopolyspora endophytica EGI 60009 NCBI: GCA_004138495.1
[Ref.: #69480]	motile	no	84.463	no
[Ref.: #69480]	flagellated	no	97.916	no
[Ref.: #69480]	gram-positive	yes	94.306	no
[Ref.: #69480]	anaerobic	no	98.761	yes
[Ref.: #69480]	aerobic	yes	91.593	yes
[Ref.: #69480]	halophile	no	50	no
[Ref.: #69480]	spore-forming	yes	62.338	no
[Ref.: #69480]	glucose-util	yes	89.043	no
[Ref.: #69480]	thermophile	no	96.042	yes
[Ref.: #69480]	glucose-ferment	no	86.645	no

Availability in culture collections External links

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Culture collection no.

DSM 46804, CPCC 204078, KCTC 29657, EGI 60009, JCM 31493

[Ref.: #89833]

SI-ID 401679

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phytoactinopolyspora mesophila sp. nov., isolated from a saline-alkaline soil.	Feng XM, Zhai XH, Liu SW, Wang CM, Sun CH, Zhou X, Zhang YJ, Li XJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004274	2020	*
Phylogeny	Phytoactinopolyspora halophila sp. nov., a halophilic actinomycete isolated from a saline soil.	Ding ZG, Ji Y, Yin M, Zhao YR, Feng YZ, Chunyu WX, Tang SK	Int J Syst Evol Microbiol	10.1099/ijsem.0.003153	2018	*
Phylogeny	Phytoactinopolyspora halotolerans sp. nov., a halotolerant actinobacterium isolated from a saline soil in Xinjiang, northwest of China.	Ji Y, Chunyu WX, Li EY, Ding ZG, Yin M, Zhao YR, Wang Y, Tang SK	Antonie Van Leeuwenhoek	10.1007/s10482-017-0923-6	2017	*
Phylogeny	Phytoactinopolyspora alkaliphila sp. nov., an alkaliphilic actinomycete isolated from a saline-alkaline soil.	Zhang YG, Lu XH, Ding YB, Zhou XK, Li L, Guo JW, Wang HF, Duan YQ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000992	2016	*
Phylogeny	Phytoactinopolyspora endophytica gen. nov., sp. nov., a halotolerant filamentous actinomycete isolated from the roots of Glycyrrhiza uralensis F.	Li L, Ma JB, Abdalla Mohamad O, Li SH, Osman G, Li YQ, Guo JW, Hozzein WN, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000322	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22627

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46804

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89833

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401679.1 )

* These data were automatically processed and therefore are not curated

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Phytoactinopolyspora endophytica EGI 60009

Phytoactinopolyspora endophytica EGI 60009

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