Name: Shouchella clausii SC-N012
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1314

Type strain:

Species: Shouchella clausii

Strain Designation: SC-N012

Culture col. no.: DSM 21911, NCCB 100267

Strain history: <- M. Madhaiyan, Tamil Nadu Agric. Univ., Coimbatore, India; SC-N012

NCBI tax ID(s): 866786 (species)

Other strains from Shouchella clausii

S. clausii PN 23, C 360, DSM 8716, ATCC 700160, ... (type strain)
S. clausii PN 43, 221, DSM 2512, ATCC 21522, ...
S. clausii PN 46, Y-76, DSM 2515, ATCC 21537, ...
S. clausii M-29, DSM 2525, ATCC 31084, FERM ...
S. clausii PN 24, C 372, DSM 9783, NCIMB 10317
S. clausii PN 35, C 374, DSM 9784, NCIMB 10319
S. clausii PN 76, Br-F, DSM 9785
S. clausii K2-6, DSM 30907
S. clausii CIP 51.33

Section

Shouchella clausii SC-N012 is a spore-forming, mesophilic, motile bacterium that was isolated from soil from the rhizosphere of sugar cane Saccharum officinarum L..

motile
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Shouchella*
	Species	**Shouchella clausii**
	Full Scientific Name (LPSN)	Shouchella clausii (Nielsen et al. 1995) Joshi et al. 2022

	Synonym	Alkalihalobacillus clausii
	Synonym	Bacillus clausii
	Synonym	Shouchella rhizosphaerae
	Synonym	Alkalihalobacillus rhizosphaerae
	Synonym	Bacillus rhizosphaerae

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %95.362

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16030]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #16030]

Culture medium growth

[Ref.: #16030]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16030]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16030]			growth	28 °C

[Ref.: #16030]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16030]	Sample type/isolated from	soil from the rhizosphere of sugar cane Saccharum officinarum L.
[Ref.: #16030]	Host species	Saccharum officinarum
[Ref.: #16030]	Geographic location (country and/or sea, region)	Coimbatore
[Ref.: #16030]	Country	India
[Ref.: #16030]	Country ISO 3 Code	IND
[Ref.: #16030]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ233848 (>99% sequence identity) for Alkalihalobacillus clausii from Microbeatlas

Aquatic Samples	1580
Soil Samples	6394
Animal Samples	5862
Plant Samples	2485
Total Samples	16321

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16030]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16030]	Bacillus rhizosphaerae strain SC-N012 16S ribosomal RNA gene, partial sequence	FJ233848	1433	ENA	866786 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shouchella rhizosphaerae SC-N012,DSM 21911,NCCB 100267	GCA_900142675	scaffold	GenBank	866786 tax ID	*
[Ref.: #66792]	Bacillus rhizosphaerae strain SC-N012,DSM 21911,NCCB 100267	866786.3	wgs	PATRIC	866786 tax ID	*

[Ref.: #16030]

GC-content

43.0 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alkalihalobacillus rhizosphaerae SC-N012,DSM 21911,NCCB 100267 NCBI: GCA_900142675.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alkalihalobacillus rhizosphaerae SC-N012,DSM 21911,NCCB 100267 NCBI: GCA_900142675.1
[Ref.: #69480]	motile	yes	90.913	no
[Ref.: #69480]	flagellated	yes	64.363	no
[Ref.: #69480]	gram-positive	yes	91.315	no
[Ref.: #69480]	anaerobic	no	99.231	no
[Ref.: #69480]	aerobic	yes	88.484	no
[Ref.: #69480]	halophile	yes	89.927	no
[Ref.: #69480]	spore-forming	yes	93.469	no
[Ref.: #69480]	thermophile	no	96.928	yes
[Ref.: #69480]	glucose-util	yes	88.727	no
[Ref.: #69480]	glucose-ferment	no	89.038	no

Availability in culture collections External links

[Ref.: #16030]

Culture collection no.

DSM 21911, NCCB 100267

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome-based reclassification of Bacillus plakortidis Borchert et al. 2007 and Bacillus lehensis Ghosh et al. 2007 as a later heterotypic synonym of Bacillus oshimensis Yumoto et al. 2005; Bacillus rhizosphaerae Madhaiyan et al. 2011 as a later heterotypic synonym of Bacillus clausii Nielsen et al. 1995.	Liu GH, Narsing Rao MP, Dong ZY, Wang JP, Che JM, Chen QQ, Sengonca C, Liu B, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-019-01299-z	2019	*
Phylogeny	Bacillus rhizosphaerae sp. nov., an novel diazotrophic bacterium isolated from sugarcane rhizosphere soil.	Madhaiyan M, Poonguzhali S, Lee JS, Lee KC, Hari K	Antonie Van Leeuwenhoek	10.1007/s10482-011-9600-3	2011	*

References

#16030

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21911

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Alkalihalobacillus rhizosphaerae SC-N012,DSM 21911,NCCB 100267

Alkalihalobacillus rhizosphaerae SC-N012,DSM 21911,NCCB 100267

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