Name: Shouchella clausii SC-N012
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1314

Type strain:

Species: Shouchella clausii

Strain Designation: SC-N012

Culture col. no.: DSM 21911, NCCB 100267

Strain history: <- M. Madhaiyan, Tamil Nadu Agric. Univ., Coimbatore, India; SC-N012

NCBI tax ID(s): 866786 (species)

Special Collections

DSMZ

Other strains from Shouchella clausii

Section

Shouchella clausii SC-N012 is a spore-forming, motile bacterium that was isolated from soil from the rhizosphere of sugar cane Saccharum officinarum L..

motile
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Shouchella*
	Species	**Shouchella clausii**
	Full Scientific Name (LPSN)	Shouchella clausii (Nielsen et al. 1995) Joshi et al. 2022

	Synonym	Alkalihalobacillus clausii
	Synonym	Bacillus clausii
	Synonym	Shouchella rhizosphaerae
	Synonym	Alkalihalobacillus rhizosphaerae
	Synonym	Bacillus rhizosphaerae

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16030]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #16030]

Culture medium growth

[Ref.: #16030]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16030]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16030]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %93.736
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16030]	Sample type/isolated from	soil from the rhizosphere of sugar cane Saccharum officinarum L.
[Ref.: #16030]	Host species	Saccharum officinarum
[Ref.: #16030]	Geographic location (country and/or sea, region)	Coimbatore
[Ref.: #16030]	Country	India
[Ref.: #16030]	Country ISO 3 Code	IND
[Ref.: #16030]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ233848 (>99% sequence identity) for Alkalihalobacillus clausii from Microbeatlas

Aquatic Samples	1580
Soil Samples	6394
Animal Samples	5862
Plant Samples	2485
Total Samples	16321

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16030]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16030]	Bacillus rhizosphaerae strain SC-N012 16S ribosomal RNA gene, partial sequence	FJ233848	1433	GenBank ENA	866786 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shouchella rhizosphaerae SC-N012,DSM 21911,NCCB 100267	GCA_900142675	scaffold	GenBank ENA	866786 tax ID	*
[Ref.: #66792]	Bacillus rhizosphaerae strain SC-N012,DSM 21911,NCCB 100267	866786.3	wgs	PATRIC	866786 tax ID	*

[Ref.: #16030]

GC-content

43.0 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alkalihalobacillus rhizosphaerae SC-N012,DSM 21911,NCCB 100267 NCBI: GCA_900142675.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alkalihalobacillus rhizosphaerae SC-N012,DSM 21911,NCCB 100267 NCBI: GCA_900142675.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	79.937	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.04	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	79.387	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	93.736	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	89.769	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	81.218	no

Availability in culture collections External links

[Ref.: #16030]

Culture collection no.

DSM 21911, NCCB 100267

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome-based reclassification of Bacillus plakortidis Borchert et al. 2007 and Bacillus lehensis Ghosh et al. 2007 as a later heterotypic synonym of Bacillus oshimensis Yumoto et al. 2005; Bacillus rhizosphaerae Madhaiyan et al. 2011 as a later heterotypic synonym of Bacillus clausii Nielsen et al. 1995.	Liu GH, Narsing Rao MP, Dong ZY, Wang JP, Che JM, Chen QQ, Sengonca C, Liu B, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-019-01299-z	2019	*
Phylogeny	Bacillus rhizosphaerae sp. nov., an novel diazotrophic bacterium isolated from sugarcane rhizosphere soil.	Madhaiyan M, Poonguzhali S, Lee JS, Lee KC, Hari K	Antonie Van Leeuwenhoek	10.1007/s10482-011-9600-3	2011	*

References

#16030

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21911

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Shouchella clausii in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Alkalihalobacillus rhizosphaerae SC-N012,DSM 21911,NCCB 100267

Alkalihalobacillus rhizosphaerae SC-N012,DSM 21911,NCCB 100267

Change proposal

Change proposal