Oceanobacillus damuensis (DSM 26901, KCTC 33146, PT-20)

Name: Oceanobacillus damuensis (DSM 26901, KCTC 33146, PT-20)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131390

Type strain

Strain Designation PT-20

Culture col. no. DSM 26901 KCTC 33146 PT-20

NCBI tax ID(s) 937928

Special Collections DSMZ KCTC

History DSMZ <- Z. Lei, Sichuan Univ., College of Light Ind., Textile and Food Eng., Chengdu, China; PT-20 <- L. Yang

Links

Oceanobacillus damuensis PT-20 is a bacterium that was isolated from saline alkali soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 407555

KCTC 33146,DSM 26901

@ref 20215

Last LPSN update 2026-05-29 08:37:36

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Oceanobacillus

Species Oceanobacillus damuensis

Full scientific name Oceanobacillus damuensis Long et al. 2015

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22617	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 80.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22617	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	93.196

Spore formation

@ref	Spore formation	Confidence
125439		91.62

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Alkaline	-
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22617	saline alkali soil	Xinjiang Province, Shache County, Damu town	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence HQ620704 (>99% sequence identity) for Oceanobacillus from Microbeatlas

Aquatic Samples	10
Soil Samples	19
Animal Samples	19
Plant Samples	8
Total Samples	56

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22617	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM161814v1 assembly for Oceanobacillus damuensis PT-20	scaffold	GCA_001618145	937928.3	2775506911	937928	46.02

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22617	Oceanobacillus damuensis strain PT-20 16S ribosomal RNA gene, partial sequence	HQ620704	1455		937928

GC content

@ref	GC-content (mol%)	Method
22617	39.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM161814v1 assembly for Oceanobacillus damuensis PT-20
NCBI: GCA_001618145

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	93.20	no
125439	gram_stain	BacteriaNetⓘ	variable	61.56	no
125439	motility	BacteriaNetⓘ	yes	78.09	no
125439	spore_formation	BacteriaNetⓘ	yes	91.62	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Oceanobacillus damuensis PT-20
NCBI: GCA_001618145.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	78.60	no
125438	anaerobic	anaerobicⓘ	no	95.76	no
125438	aerobic	aerobicⓘ	yes	75.75	no
125438	spore-forming	spore-formingⓘ	yes	88.58	no
125438	thermophilic	thermophileⓘ	no	92.88	yes
125438	flagellated	motile2+ⓘ	yes	82.01	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanobacillus endoradicis sp. nov., an endophytic bacterial species isolated from the root of Paris polyphylla Smith var. yunnanensis.	Yang LL, Tang SK, Chu X, Jiang Z, Xu LH, Zhi XY	Antonie Van Leeuwenhoek	10.1007/s10482-016-0695-4	2016
Phylogeny	Oceanobacillus damuensis sp. nov. and Oceanobacillus rekensis sp. nov., isolated from saline alkali soil samples.	Long X, Ye R, Zhang S, Liu B, Zhang Y, Zeng Z, Tian Y	Antonie Van Leeuwenhoek	10.1007/s10482-015-0529-9	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22617	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26901
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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About us

Oceanobacillus damuensis (DSM 26901, KCTC 33146, PT-20)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001618145

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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