Name: Pseudomonas donghuensis HYS
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131382

Type strain:

Species: Pseudomonas donghuensis

Strain Designation: HYS

Culture col. no.: DSM 101685, CCTCC AB 2012141, NRRL B-59108

Strain history: <- Z. Xie, College of Life Sciences, Wuhan University, China; HYS <- X. Zhao, College of Life Sciences, Wuhan University, China

NCBI tax ID(s): 1163398 (species)

SI-ID 401568

DSM 101685

Section

Pseudomonas donghuensis HYS is a mesophilic bacterium that was isolated from lake water.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas donghuensis**
	Full Scientific Name (LPSN)	Pseudomonas donghuensis Gao et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22609]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #22609]

Culture medium growth

[Ref.: #22609]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22609]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22609]			growth	28 °C

[Ref.: #22609]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22609]

Name of produced compound

siderophore

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #22609]	25323	+	-	-	+	-	+/-	+	-	+	-	-	-	+	-	+	+	-	+	+	+	+
[Ref.: #22609]	23548	+	-	-	+	-	-	+	-	+	-	-	-	+	-	+	+	-	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22609]	Sample type/isolated from	lake water
[Ref.: #22609]	Geographic location (country and/or sea, region)	Wuhan, Donghu Lake
[Ref.: #22609]	Country	China
[Ref.: #22609]	Country ISO 3 Code	CHN
[Ref.: #22609]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Lake (large)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22609]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas donghuensis HYS	GCA_000259195	scaffold	GenBank	1163398 tax ID	*
[Ref.: #66792]	Pseudomonas donghuensis HYS	2548877042	draft	JGI IMG/M	1163398 tax ID	*
[Ref.: #66792]	Pseudomonas donghuensis HYS	2806311067	draft	JGI IMG/M	1163398 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas donghuensis HYS NCBI: GCA_000259195.1
[Ref.: #69480]	motile	yes	91.755	no
[Ref.: #69480]	flagellated	yes	83.952	no
[Ref.: #69480]	gram-positive	no	98.338	no
[Ref.: #69480]	anaerobic	no	98.405	no
[Ref.: #69480]	aerobic	yes	95.994	no
[Ref.: #69480]	halophile	no	85.906	no
[Ref.: #69480]	spore-forming	no	95.28	no
[Ref.: #69480]	glucose-util	yes	93.846	yes
[Ref.: #69480]	thermophile	no	99.873	yes
[Ref.: #69480]	glucose-ferment	no	87.358	yes

Availability in culture collections External links

[Ref.: #22609]

Culture collection no.

DSM 101685, CCTCC AB 2012141, NRRL B-59108

[Ref.: #89819]

SI-ID 401568

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas donghuensis sp. nov., exhibiting high-yields of siderophore.	Gao J, Xie G, Peng F, Xie Z	Antonie Van Leeuwenhoek	10.1007/s10482-014-0306-1	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22609

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101685

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89819

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401568.1 )

* These data were automatically processed and therefore are not curated

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