Microbacterium enclense (DSM 25125, CCTCC AB 2011120, NCIM 5454)

Name: Microbacterium enclense (DSM 25125, CCTCC AB 2011120, NCIM 5454)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131353

Type strain

Strain Designation NIO-1002

Culture col. no. DSM 25125 CCTCC AB 2011120 NCIM 5454 NIO-1002 CIP 110922

NCBI tax ID(s) 993073

Special Collections DSMZ CIP

Links

Microbacterium enclense NIO-1002 is a mesophilic, Gram-positive, rod-shaped prokaryote that was isolated from marine sediment.

Gram-positive rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 413886

CIP 110922

@ref 20215

Last LPSN update 2025-12-16 10:01:13

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Microbacterium

Species Microbacterium enclense

Full scientific name Microbacterium enclense Mawlankar et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	96
125438		94
125438	positive	91.788
119024	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
35085	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119024	CIP Medium 72

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
35085	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.235
125439	obligate aerobe	96.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
22580	marine sediment	Goa Province, Chorao Island (15° 32' 34'' N 73° 55' 15'' E)	India	IND	Asia	15.5428	73.9208 15.5428/73.9208
119024	Environment, Marine sediment	Chorao Island, Goa	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence JF421612 (>99% sequence identity) for Microbacterium from Microbeatlas

Aquatic Samples	27
Soil Samples	34
Animal Samples	89
Plant Samples	136
Total Samples	286

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
119024	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2616644834 annotated assembly for Microbacterium enclense NIO-1002	scaffold	GCA_900096885	993073.5	2616644834	993073	74.08
66792	ASM145695v1 assembly for Microbacterium enclense NIO-1002	scaffold	GCA_001456955	993073.4	2802429339	993073	74.08

Genome browser: GCA_900096885

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22580	Microbacterium enclense strain NIO-1002 16S ribosomal RNA gene, partial sequence	JF421612	1414		993073

GC content

@ref	GC-content (mol%)	Method
22580	66.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Microbacterium enclense NIO-1002
NCBI: GCA_900096885

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	68.60	no
125439	motility	BacteriaNetⓘ	no	69.20	no
125439	gram_stain	BacteriaNetⓘ	positive	96.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Microbacterium enclense NIO-1002
NCBI: GCA_900096885.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.79	no
125438	anaerobic	anaerobicⓘ	no	98.25	no
125438	aerobic	aerobicⓘ	yes	90.24	no
125438	spore-forming	spore-formingⓘ	no	76.50	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	no	94.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium enclense sp. nov., isolated from sediment sample.	Mawlankar RR, Mual P, Sonalkar VV, Thorat MN, Verma A, Srinivasan K, Dastager SG	Int J Syst Evol Microbiol	10.1099/ijs.0.000221	2015
Phylogeny	Microbacterium zeae sp. nov., an endophytic bacterium isolated from maize stem.	Gao JL, Sun P, Wang XM, Lv FY, Sun JG	Antonie Van Leeuwenhoek	10.1007/s10482-017-0837-3	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22580	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25125
#35085	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119024	Collection of Institut Pasteur ; Curators of the CIP; CIP 110922
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Microbacterium enclense (DSM 25125, CCTCC AB 2011120, NCIM 5454)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900096885

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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