Name: Microbacterium enclense NIO-1002
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131353

Type strain:

Species: Microbacterium enclense

Strain Designation: NIO-1002

Culture col. no.: DSM 25125, CCTCC AB 2011120, NCIM 5454, CIP 110922

Strain history: CIP <- 2015, S.G. Dastager, NCIM, Pune, India: strain NIO-1002

NCBI tax ID(s): 993073 (species)

Section

Microbacterium enclense NIO-1002 is a mesophilic bacterium that was isolated from marine sediment.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium enclense**
	Full Scientific Name (LPSN)	Microbacterium enclense Mawlankar et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #119024]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #119024]	Cell shape	rod-shaped

[Ref.: #119024]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.73

Information on culture and growth conditions Culture and growth conditions

[Ref.: #35085]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #35085]

Culture medium growth

[Ref.: #35085]

Culture medium composition

expand / minimize

[Ref.: #119024]

Culture medium

CIP Medium 72

[Ref.: #119024]

Culture medium growth

[Ref.: #119024]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #35085]			growth	30 °C

[Ref.: #35085]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22580]	Sample type/isolated from	marine sediment
[Ref.: #22580]	Geographic location (country and/or sea, region)	Goa Province, Chorao Island (15° 32' 34'' N 73° 55' 15'' E)
[Ref.: #22580]	Country	India
[Ref.: #22580]	Country ISO 3 Code	IND
[Ref.: #22580]	Continent	Asia
[Ref.: #22580]	Geographic location	15.5428°/73.9208°

[Ref.: #119024]	Sample type/isolated from	Environment, Marine sediment
[Ref.: #119024]	Geographic location (country and/or sea, region)	Chorao Island, Goa
[Ref.: #119024]	Country	India
[Ref.: #119024]	Country ISO 3 Code	IND
[Ref.: #119024]	Continent	Asia
[Ref.: #119024]	Isolation date	2011-06-08
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF421612 (>99% sequence identity) for Microbacterium from Microbeatlas

Aquatic Samples	27
Soil Samples	34
Animal Samples	89
Plant Samples	136
Total Samples	286

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #119024]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22580]	Microbacterium enclense strain NIO-1002 16S ribosomal RNA gene, partial sequence	JF421612	1414	ENA	993073 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbacterium enclense NIO-1002	GCA_900096885	scaffold	GenBank	993073 tax ID	*
[Ref.: #66792]	Microbacterium enclense NIO-1002	GCA_001456955	scaffold	GenBank	993073 tax ID	*
[Ref.: #66792]	Microbacterium enclense strain NIO-1002	993073.4	wgs	PATRIC	993073 tax ID	*
[Ref.: #66792]	Microbacterium enclense NIO-1002	2802429339	draft	JGI IMG/M	993073 tax ID	*

[Ref.: #22580]

GC-content

66.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbacterium enclense NIO-1002 NCBI: GCA_900096885.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacterium enclense NIO-1002 NCBI: GCA_900096885.1
[Ref.: #69480]	motile	no	93.032	no
[Ref.: #69480]	flagellated	no	97.723	no
[Ref.: #69480]	gram-positive	yes	93.908	no
[Ref.: #69480]	anaerobic	no	99.662	no
[Ref.: #69480]	aerobic	yes	96.099	no
[Ref.: #69480]	halophile	no	85.221	no
[Ref.: #69480]	spore-forming	no	95.691	no
[Ref.: #69480]	glucose-ferment	no	91.173	no
[Ref.: #69480]	thermophile	no	98.991	yes
[Ref.: #69480]	glucose-util	yes	85.554	no

Availability in culture collections External links

[Ref.: #22580]

Culture collection no.

DSM 25125, CCTCC AB 2011120, NCIM 5454, CIP 110922

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium enclense sp. nov., isolated from sediment sample.	Mawlankar RR, Mual P, Sonalkar VV, Thorat MN, Verma A, Srinivasan K, Dastager SG	Int J Syst Evol Microbiol	10.1099/ijs.0.000221	2015	*
Phylogeny	Microbacterium zeae sp. nov., an endophytic bacterium isolated from maize stem.	Gao JL, Sun P, Wang XM, Lv FY, Sun JG	Antonie Van Leeuwenhoek	10.1007/s10482-017-0837-3	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22580

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25125

#35085 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#119024 Collection of Institut Pasteur ; Curators of the CIP; CIP 110922
* These data were automatically processed and therefore are not curated

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