Catellatospora paridis (DSM 100519, CGMCC 4.7236, NEAU-CL2)

Name: Catellatospora paridis (DSM 100519, CGMCC 4.7236, NEAU-CL2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131345

Type strain

Strain Designation NEAU-CL2

Culture col. no. DSM 100519 CGMCC 4.7236 NEAU-CL2 JCM 32489

NCBI tax ID(s) 1617086

Special Collections DSMZ JCM Wink compendium

Links

Catellatospora paridis NEAU-CL2 is a mesophilic prokaryote that was isolated from rhizosphere soil of Paris polyphylla.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 408342

DSM 100519

@ref 20215

Last LPSN update 2025-12-16 10:01:13

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Catellatospora

Species Catellatospora paridis

Full scientific name Catellatospora paridis Jia et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.6

Colony morphology

@ref	Colony color	Medium used
69239	Golden yellow (1004)	suter with tyrosine
69239	Ivory (1014)	ISP 6
69239	Maize yellow (1006)	ISP 2
69239	Sand yellow (1002), grey beige (1019)	ISP 7
69239	Signal yellow (1003)	suter without tyrosine
69239	Signal yellow (1003), daffodil yellow (1007)	ISP 4
69239	Signal yellow (1003), golden yellow (1004)	ISP 3
69239	Traffic yellow (1023)	ISP 5

Multicellular morphology

@ref	Complex name	Medium name
69239	Aerial mycelium	ISP 2
69239	Aerial mycelium	ISP 3
69239	Aerial mycelium	ISP 4
69239	Aerial mycelium	ISP 5
69239	Aerial mycelium	ISP 6
69239	Aerial mycelium	ISP 7
69239	Aerial mycelium	suter with tyrosine
69239	Aerial mycelium	suter without tyrosine

Pigmentation

@ref	Production	Name
69239		Melanin
69239		soluble pigment

Multimedia

@ref:	22572
multimedia content:	DSM_100519.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_100519.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22572	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
22572	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22572	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.5

Spore formation

@ref	Spore formation	Confidence
125438		92.758

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69239	NaCl	positive	growth	0 %

Observation

67770

Observationquinones: MK-9(H₄), MK-9(H₆), MK-8(H₆)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69239	22599 ChEBI	arabinose	+	growth
69239	62968 ChEBI	cellulose	-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
69239	28757 ChEBI	fructose	-	growth
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
69239	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69239	17268 ChEBI	inositol	+/-	growth
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69239	37684 ChEBI	mannose	+/-	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69239	16634 ChEBI	raffinose	-	growth
69239	26546 ChEBI	rhamnose	-	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69239	17992 ChEBI	sucrose	+	growth
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69239	18222 ChEBI	xylose	+	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API Coryne
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69239	-	-	-	+	-	+	+	+	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69239	not determinedn.d.	+	+/-	+/-	-	+	+/-	-	+/-	+	+	+/-	+	+	-	+	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
22572	rhizosphere soil of Paris polyphylla	Paris polyphylla	Heilongjiang province, Harbin (45°3'N, 125°13'E)	China	CHN	Asia	45.05	125.217 45.05/125.217
67770	Rhizosphere soil of Paris polyphylla from Heilongjiang Province	Paris polyphylla	north China	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KP208837 (>99% sequence identity) for Catellatospora from Microbeatlas

Aquatic Samples	89
Soil Samples	939
Animal Samples	57
Plant Samples	287
Total Samples	1372

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22572	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM972036v1 assembly for Catellatospora paridis NEAU-CL2	scaffold	GCA_009720365	1617086.3	2887478801	1617086	62.66

Genome browser: GCA_009720365

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22572	Catellatospora paridis strain NEAU-CL2 16S ribosomal RNA gene, partial sequence	KP208837	1509		1617086

GC content

@ref	GC-content (mol%)	Method
22572	70.8	thermal denaturation, midpoint method (Tm)
67770	70.1-71.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Catellatospora paridis NEAU-CL2
NCBI: GCA_009720365

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	75.20	no
125439	motility	BacteriaNetⓘ	no	81.60	no
125439	gram_stain	BacteriaNetⓘ	positive	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Catellatospora paridis NEAU-CL2
NCBI: GCA_009720365.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.36	no
125438	anaerobic	anaerobicⓘ	no	94.77	no
125438	aerobic	aerobicⓘ	yes	88.85	no
125438	spore-forming	spore-formingⓘ	yes	92.76	no
125438	thermophilic	thermophileⓘ	no	95.50	yes
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Catellatospora vulcania sp. nov. and Catellatospora paridis sp. nov., two novel actinobacteria isolated from volcanic sediment and the rhizosphere of Paris polyphylla.	Jia F, Guo S, Shen Y, Gao M, Liu C, Zhou S, Li J, Guan X, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0608-y	2015
Phylogeny	Catellatospora sichuanensis sp. nov., a novel actinobacterium isolated from soil.	Liu C, Guo Y, Li L, Wang X, Lin J, Wang X, Li J, Chu Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004175	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22572	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100519
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69239	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Catellatospora paridis (DSM 100519, CGMCC 4.7236, NEAU-CL2)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_009720365

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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