Name: Catellatospora paridis NEAU-CL2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131345

Type strain:

Species: Catellatospora paridis

Strain Designation: NEAU-CL2

Culture col. no.: DSM 100519, CGMCC 4.7236, JCM 32489

Strain history: CGMCC 4.7236 <-- C. Liu; Northeast Agric. Univ., China; NEAU-CL2.

NCBI tax ID(s): 1617086 (species)

SI-ID 408342

DSM 100519

Section

Catellatospora paridis NEAU-CL2 is a spore-forming, mesophilic bacterium that was isolated from rhizosphere soil of Paris polyphylla.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Catellatospora*
	Species	**Catellatospora paridis**
	Full Scientific Name (LPSN)	Catellatospora paridis Jia et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %90.925

[Ref.: #69239]	Colony color	Golden yellow (1004)
[Ref.: #69239]	Cultivation medium used	suter with tyrosine

[Ref.: #69239]	Colony color	Ivory (1014)
[Ref.: #69239]	Cultivation medium used	ISP 6

[Ref.: #69239]	Colony color	Maize yellow (1006)
[Ref.: #69239]	Cultivation medium used	ISP 2

[Ref.: #69239]	Colony color	Sand yellow (1002), grey beige (1019)
[Ref.: #69239]	Cultivation medium used	ISP 7

[Ref.: #69239]	Colony color	Signal yellow (1003)
[Ref.: #69239]	Cultivation medium used	suter without tyrosine

[Ref.: #69239]	Colony color	Signal yellow (1003), daffodil yellow (1007)
[Ref.: #69239]	Cultivation medium used	ISP 4

[Ref.: #69239]	Colony color	Signal yellow (1003), golden yellow (1004)
[Ref.: #69239]	Cultivation medium used	ISP 3

[Ref.: #69239]	Colony color	Traffic yellow (1023)
[Ref.: #69239]	Cultivation medium used	ISP 5

[Ref.: #69239]	Pigment production	yes
[Ref.: #69239]	Pigment name	Melanin
[Ref.: #69239]	Pigment production	yes
[Ref.: #69239]	Pigmentation color	Sand yellow (1002), brown beige (1011)
[Ref.: #69239]	Pigment name	soluble pigment

[Ref.: #69239]	Multicellular complex forming ability	no
[Ref.: #69239]	Multicellular complex name	Aerial mycelium
[Ref.: #69239]	Medium Name (multicellularity)	ISP 2

[Ref.: #69239]	Multicellular complex forming ability	no
[Ref.: #69239]	Multicellular complex name	Aerial mycelium
[Ref.: #69239]	Medium Name (multicellularity)	ISP 3

[Ref.: #69239]	Multicellular complex forming ability	no
[Ref.: #69239]	Multicellular complex name	Aerial mycelium
[Ref.: #69239]	Medium Name (multicellularity)	ISP 4

[Ref.: #69239]	Multicellular complex forming ability	no
[Ref.: #69239]	Multicellular complex name	Aerial mycelium
[Ref.: #69239]	Medium Name (multicellularity)	ISP 5

[Ref.: #69239]	Multicellular complex forming ability	no
[Ref.: #69239]	Multicellular complex name	Aerial mycelium
[Ref.: #69239]	Medium Name (multicellularity)	ISP 6

[Ref.: #69239]	Multicellular complex forming ability	no
[Ref.: #69239]	Multicellular complex name	Aerial mycelium
[Ref.: #69239]	Medium Name (multicellularity)	ISP 7

[Ref.: #69239]	Multicellular complex forming ability	no
[Ref.: #69239]	Multicellular complex name	Aerial mycelium
[Ref.: #69239]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69239]	Multicellular complex forming ability	no
[Ref.: #69239]	Multicellular complex name	Aerial mycelium
[Ref.: #69239]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #22572]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22572]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #22572]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.313

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69239]		NaCl		growth	0	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆), MK-8(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69239]	arabinose ChEBI	+	growth
[Ref.: #69239]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69239]	fructose ChEBI	-	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69239]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69239]	inositol ChEBI	+/-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69239]	mannose ChEBI	+/-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69239]	raffinose ChEBI	-	growth
[Ref.: #69239]	rhamnose ChEBI	-	growth
[Ref.: #69239]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69239]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69239]	3733	-	-	-	+	-	+	+	+	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69239]	5917	not determinedn.d.	+	+/-	+/-	-	+	+/-	-	+/-	+	+	+/-	+	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22572]	Sample type/isolated from	rhizosphere soil of Paris polyphylla
[Ref.: #22572]	Host species	Paris polyphylla
[Ref.: #22572]	Geographic location (country and/or sea, region)	Heilongjiang province, Harbin (45°3'N, 125°13'E)
[Ref.: #22572]	Country	China
[Ref.: #22572]	Country ISO 3 Code	CHN
[Ref.: #22572]	Continent	Asia
[Ref.: #22572]	Geographic location	45.0500°/125.2170°

[Ref.: #67770]	Sample type/isolated from	Rhizosphere soil of Paris polyphylla from Heilongjiang Province
[Ref.: #67770]	Host species	Paris polyphylla
[Ref.: #67770]	Geographic location (country and/or sea, region)	north China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP208837 (>99% sequence identity) for Catellatospora from Microbeatlas

Aquatic Samples	89
Soil Samples	939
Animal Samples	57
Plant Samples	287
Total Samples	1372

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22572]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22572]	Catellatospora paridis strain NEAU-CL2 16S ribosomal RNA gene, partial sequence	KP208837	1509	ENA	1617086 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Catellatospora paridis NEAU-CL2	GCA_009720365	scaffold	GenBank	1617086 tax ID	*
[Ref.: #66792]	Catellatospora paridis NEAU-CL2	2887478801	draft	JGI IMG/M	1617086 tax ID	*

[Ref.: #22572]	GC-content	70.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	70.1-71.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Catellatospora paridis NEAU-CL2 NCBI: GCA_009720365.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Catellatospora paridis NEAU-CL2 NCBI: GCA_009720365.1
[Ref.: #69480]	motile	no	94.05	no
[Ref.: #69480]	flagellated	no	97.563	no
[Ref.: #69480]	gram-positive	yes	85.037	no
[Ref.: #69480]	anaerobic	no	99.319	no
[Ref.: #69480]	aerobic	yes	92.612	no
[Ref.: #69480]	halophile	no	93.912	yes
[Ref.: #69480]	spore-forming	yes	92.39	no
[Ref.: #69480]	glucose-util	yes	87.714	yes
[Ref.: #69480]	glucose-ferment	no	90.248	no
[Ref.: #69480]	thermophile	no	99.084	no

Availability in culture collections External links

[Ref.: #22572]

Culture collection no.

DSM 100519, CGMCC 4.7236, JCM 32489

[Ref.: #89786]

SI-ID 408342

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Catellatospora vulcania sp. nov. and Catellatospora paridis sp. nov., two novel actinobacteria isolated from volcanic sediment and the rhizosphere of Paris polyphylla.	Jia F, Guo S, Shen Y, Gao M, Liu C, Zhou S, Li J, Guan X, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0608-y	2015	*
Phylogeny	Catellatospora sichuanensis sp. nov., a novel actinobacterium isolated from soil.	Liu C, Guo Y, Li L, Wang X, Lin J, Wang X, Li J, Chu Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004175	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22572

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100519

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69239

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89786

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408342.1 )

* These data were automatically processed and therefore are not curated

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