Name: Hymenobacter luteus DSM 26718
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131335

Type strain:

Species: Hymenobacter luteus

Culture col. no.: DSM 26718, CCTCC AB 2012947, JCM 30328, YIM 77921

Strain history: W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 77921.

NCBI tax ID(s): 1411122 (species)

Section

Hymenobacter luteus DSM 26718 is a mesophilic bacterium that was isolated from freshwater sediment.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter luteus**
	Full Scientific Name (PNU)	Hymenobacter luteus Liu et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

negative Confidence in %99.993

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22562]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

[Ref.: #22562]

Culture medium growth

[Ref.: #22562]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #22562]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22562]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #22562]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22562]	Sample type/isolated from	freshwater sediment
[Ref.: #22562]	Geographic location (country and/or sea, region)	Yunnan province, Yiliang county, Jiuxiang tourist cave (E 103° 22.791', N 25° 04.270')
[Ref.: #22562]	Country	China
[Ref.: #22562]	Country ISO 3 Code	CHN
[Ref.: #22562]	Continent	Asia
[Ref.: #22562]	Geographic location	25.0712°/103.3800°

[Ref.: #67770]	Sample type/isolated from	Freshwater sediment of Jiuxiang tourist cave in Yiliang country
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Freshwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB859261 (>99% sequence identity) for Hymenobacter from Microbeatlas

Aquatic Samples	150
Soil Samples	123
Animal Samples	891
Plant Samples	53
Total Samples	1217

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22562]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22562]	Hymenobacter luteus gene for 16S ribosomal RNA, partial sequence	AB859261	1545	ENA	1411122 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hymenobacter luteus DSM 26718	GCA_014202325	scaffold	GenBank	1411122 tax ID	*
[Ref.: #66792]	Hymenobacter luteus strain DSM 26718	1411122.3	wgs	PATRIC	1411122 tax ID	*
[Ref.: #66792]	Hymenobacter luteus DSM 26718	2861397439	draft	JGI IMG/M	1411122 tax ID	*

[Ref.: #22562]

GC-content

59.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hymenobacter luteus DSM 26718 NCBI: GCA_014202325.1
[Ref.: #69480]	anaerobic	no	96.093	no
[Ref.: #69480]	gram-positive	no	99.993	yes
[Ref.: #69480]	spore-forming	no	99.999	yes
[Ref.: #69480]	thermophile	no	99.348	no
[Ref.: #69480]	motile	no	85.66	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Hymenobacter luteus DSM 26718 NCBI: GCA_014202325.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #22562]

Culture collection no.

DSM 26718, CCTCC AB 2012947, JCM 30328, YIM 77921

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter sediminis sp. nov., isolated from lake sediment.	Wang C, Liu BT, Zhang R, Liu CL, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003990	2020	*
Phylogeny	Hymenobacter latericoloratus sp. nov. and Hymenobacter luteus sp. nov., isolated from freshwater sediment.	Liu L, Zhou EM, Jiao JY, Manikprabhu D, Ming H, Liu WH, Hozzein WN, Shu WS, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0314-1	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22562

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26718

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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