Name: Hymenobacter latericoloratus DSM 26701
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131334

Type strain:

Species: Hymenobacter latericoloratus

Culture col. no.: DSM 26701, CCTCC AB 2012949, JCM 30327, YIM 77920

Strain history: W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 77920.

NCBI tax ID(s): 1411121 (species)

SI-ID 400413

DSM 26701

Section

Hymenobacter latericoloratus DSM 26701 is a mesophilic, Gram-negative bacterium that was isolated from freshwater sediment.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter latericoloratus**
	Full Scientific Name (LPSN)	Hymenobacter latericoloratus Liu et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.993

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22561]

Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

[Ref.: #22561]

Culture medium growth

[Ref.: #22561]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22561]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22561]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #22561]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22561]	Sample type/isolated from	freshwater sediment
[Ref.: #22561]	Geographic location (country and/or sea, region)	Yunnan province, Yiliang county, Jiuxiang tourist cave (E 103° 22.791', N 25° 04.270')
[Ref.: #22561]	Country	China
[Ref.: #22561]	Country ISO 3 Code	CHN
[Ref.: #22561]	Continent	Asia
[Ref.: #22561]	Geographic location	25.0712°/103.3800°

[Ref.: #67770]	Sample type/isolated from	Freshwater sediment of Jiuxiang tourist cave in Yiliang country
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Freshwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB859260 (>99% sequence identity) for Hymenobacter from Microbeatlas

Aquatic Samples	150
Soil Samples	123
Animal Samples	891
Plant Samples	53
Total Samples	1217

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22561]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22561]	Hymenobacter latericoloratus gene for 16S ribosomal RNA, partial sequence	AB859260	1540	ENA	1411121 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hymenobacter latericoloratus DSM 26701	GCA_014199535	scaffold	GenBank	1411121 tax ID	*
[Ref.: #66792]	Hymenobacter latericoloratus strain DSM 26701	1411121.3	wgs	PATRIC	1411121 tax ID	*
[Ref.: #66792]	Hymenobacter latericoloratus DSM 26701	2828589702	draft	JGI IMG/M	1411121 tax ID	*

[Ref.: #22561]

GC-content

57.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Hymenobacter latericoloratus DSM 26701 NCBI: GCA_014199535.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hymenobacter latericoloratus DSM 26701 NCBI: GCA_014199535.1
[Ref.: #69480]	flagellated	no	96.956	no
[Ref.: #69480]	gram-positive	no	97.208	no
[Ref.: #69480]	anaerobic	no	99.402	no
[Ref.: #69480]	aerobic	yes	90.641	no
[Ref.: #69480]	halophile	no	93.635	no
[Ref.: #69480]	spore-forming	no	93.893	no
[Ref.: #69480]	glucose-util	yes	80.003	no
[Ref.: #69480]	thermophile	no	95.886	yes
[Ref.: #69480]	glucose-ferment	no	91.003	no
[Ref.: #69480]	motile	no	90.812	no

Availability in culture collections External links

[Ref.: #22561]

Culture collection no.

DSM 26701, CCTCC AB 2012949, JCM 30327, YIM 77920

[Ref.: #89775]

SI-ID 400413

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter sediminis sp. nov., isolated from lake sediment.	Wang C, Liu BT, Zhang R, Liu CL, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003990	2020	*
Phylogeny	Hymenobacter latericoloratus sp. nov. and Hymenobacter luteus sp. nov., isolated from freshwater sediment.	Liu L, Zhou EM, Jiao JY, Manikprabhu D, Ming H, Liu WH, Hozzein WN, Shu WS, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0314-1	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22561

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26701

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89775

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400413.1 )

* These data were automatically processed and therefore are not curated

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