Microbacterium panaciterrae (DSM 100921, JCM 17839, KCTC 19884)

Name: Microbacterium panaciterrae (DSM 100921, JCM 17839, KCTC 19884)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131322

Type strain

Culture col. no. DSM 100921 JCM 17839 KCTC 19884 DCY 56

NCBI tax ID(s) 985759

Special Collections DSMZ JCM KCTC

History <- JCM; JCM 17839 <-D.C. Yang; Kyung Hee University, Republik of Korea; DCY56 D.-C. Yang DCY56. <- YJ KIm, Kyunghee Univ.

Links

Microbacterium panaciterrae DSM 100921 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from soil of ginseng field.

Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397563

KCTC 19884,JCM 17839,DSM 100921

@ref 20215

Last LPSN update 2026-02-09 11:31:26

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Microbacterium

Species Microbacterium panaciterrae

Full scientific name Microbacterium panaciterrae Nguyen et al. 2015

Morphology

Cell morphology

67771

Gram stainpositive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22549	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22549	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic
67771	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

67771

Oxygen toleranceaerobe

Observation

67770

Observationquinones: MK-12, MK-13

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22549	soil of ginseng field	Chungnam Province	Republic of Korea	KOR	Asia
67770	Soil from a ginseng field
67771	From ginseng soil	Kyunghee Univ.	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22549	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954163v1 assembly for Microbacterium panaciterrae JCM 17839	scaffold	GCA_039541635	985759	69.78

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22549	Microbacterium panaciterrae strain DCY56 16S ribosomal RNA gene, partial sequence	HQ844973	1433		985759

GC content

@ref	GC-content (mol%)	Method
22549	68.5
67770	68.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium panaciterrae sp. nov., isolated from the rhizosphere of ginseng.	Nguyen NL, Kim YJ, Hoang VA, Min JW, Hwang KH, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.000041	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22549	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100921
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Microbacterium panaciterrae (DSM 100921, JCM 17839, KCTC 19884)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039541635

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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