Name: Paraburkholderia susongensis L226
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131317

Type strain:

Species: Paraburkholderia susongensis

Strain Designation: L226

Culture col. no.: DSM 100877, CCTCC AB 2014142, JCM 30231, LMG 29540

Strain history: X. F. Sheng; Nanjing Agric. Univ., China; L226.

NCBI tax ID(s): 1515439 (species)

SI-ID 406031

DSM 100877

Special Collections

DSMZ
JCM

Section

Paraburkholderia susongensis L226 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from weathered rock surface .

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Paraburkholderia*
	Species	**Paraburkholderia susongensis**
	Full Scientific Name (LPSN)	Paraburkholderia susongensis (Gu et al. 2015) Dobritsa and Samadpour 2016

Synonym

Burkholderia susongensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.994

[Ref.: #22544]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22544]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22544]

Culture medium growth

[Ref.: #22544]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22544]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22544]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.15

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #22544]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22544]	Sample type/isolated from	weathered rock surface (mica schist)
[Ref.: #22544]	Geographic location (country and/or sea, region)	Anhui Province, Susong
[Ref.: #22544]	Country	China
[Ref.: #22544]	Country ISO 3 Code	CHN
[Ref.: #22544]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Weathered surfaces of rock (mica schist) in Susong
[Ref.: #67770]	Geographic location (country and/or sea, region)	Anhui Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ746438 (>99% sequence identity) for Paraburkholderia from Microbeatlas

Aquatic Samples	21
Soil Samples	323
Animal Samples	64
Plant Samples
Total Samples	408

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22544]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22544]	Paraburkholderia susongensis strain L226 16S ribosomal RNA gene, partial sequence	KJ746438	1453	GenBank ENA	1515439 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paraburkholderia susongensis LMG 29540	GCA_900177725	scaffold	GenBank ENA	1515439 tax ID
[Ref.: #66792]	Paraburkholderia susongensis strain LMG 29540	1515439.3	wgs	PATRIC	1515439 tax ID	*
[Ref.: #66792]	Paraburkholderia susongensis LMG 29540	2708742529	draft	JGI IMG/M	1515439 tax ID	*

[Ref.: #22544]

GC-content

63.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paraburkholderia susongensis LMG 29540 NCBI: GCA_900177725.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paraburkholderia susongensis strain LMG 29540 PATRIC: 1515439.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.994	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.452	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.444	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.15	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.497	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	86.671	no

Availability in culture collections External links

[Ref.: #22544]

Culture collection no.

DSM 100877, CCTCC AB 2014142, JCM 30231, LMG 29540

[Ref.: #89758]

SI-ID 406031

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Burkholderia susongensis sp. nov., a mineral-weathering bacterium isolated from weathered rock surface.	Gu JY, Zang SG, Sheng XF, He LY, Huang Z, Wang Q	Int J Syst Evol Microbiol	10.1099/ijs.0.000059	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22544

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100877

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89758

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406031.1 )

* These data were automatically processed and therefore are not curated

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Paraburkholderia susongensis LMG 29540

Paraburkholderia susongensis strain LMG 29540

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