Pseudomonas peli (DSM 17833, CCM 7693, LMG 23201)

Name: Pseudomonas peli (DSM 17833, CCM 7693, LMG 23201)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13130

Type strain

Strain Designation R-20805

Culture col. no. DSM 17833 CCM 7693 LMG 23201 CCUG 53775 R-20805 1 more

NCBI tax ID(s) 592361

Special Collections DSMZ CCUG Literature strains CIP

History <- B. Vanparys; R-20805 2006, DSMZ CIP <- 2006, DSMZ

Links

Pseudomonas peli R-20805 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from nitrifying enrichment culture.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 94072

LMG 23201,DSM 17833,CCUG 53775,CIP 109374

@ref 20215

Last LPSN update 2025-12-16 09:50:01

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas peli

Full scientific name Pseudomonas peli Vanparys et al. 2006

BacDive ID	Other strains from **Pseudomonas peli** (5)	Type strain
150678	P. peli CCUG 41946 C
150681	P. peli CCUG 41951 B
150724	P. peli CCUG 42076 B
154428	P. peli CCUG 53570
154919	P. peli CCUG 55707

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31765	negative	02-03 µm	1 µm	rod-shaped
121654	negative			rod-shaped
125438					91.841
125438	negative				99.5
125439	negative				100
125439					95.3

Pigmentation

31765

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7204	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
7204	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
37532	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121654	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7204	positive	growth	28	mesophilic
31765	positive	growth	28-37	mesophilic
31765	positive	optimum	30-37	mesophilic
37532	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
31765	positive	optimum	7
31765	positive	growth	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31765	aerobe
121654	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
31765
125439		99.7

Observation

31765

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
31765	25115 ChEBI	malate	+	carbon source
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
121654	17632 ChEBI	nitrate	+	reduction
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
121654	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121654	35581 ChEBI	indole
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31765	catalase	+	1.11.1.6
121654	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31765	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121654	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
121654	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121654	-	+	-	+	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
7204	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Laboratory	#Lab enrichment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7204	nitrifying enrichment culture	Gent	Belgium	BEL	Europe
60009	A nitrifying inoculum
121654	Nitrifying inoculum	Ghent	Belgium	BEL	Europe

Taxonmaps

69479

Global distribution of 16S sequence AM114534 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	4373
Soil Samples	958
Animal Samples	948
Plant Samples	159
Total Samples	6438

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7204	1	Risk group (German classification) According to TRBA 466
121654	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1298614v1 assembly for Pseudomonas peli DSM 17833	contig	GCA_012986145	592361.12	8010781867	592361	75.99
66792	IMG-taxon 2671180067 annotated assembly for Pseudomonas peli DSM 17833	scaffold	GCA_900099645	592361.3	2671180067	592361	75.12

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7204	Pseudomonas peli partial 16S rRNA gene, type strain R-20805T	AM114534	1497		592361

GC content

31765

GC-content (mol%)60.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas peli DSM 17833
NCBI: GCA_900099645

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	95.30	no
125439	gram_stain	BacteriaNetⓘ	negative	100.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas peli DSM 17833
NCBI: GCA_900099645.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	97.78	yes
125438	aerobic	aerobicⓘ	yes	88.51	no
125438	spore-forming	spore-formingⓘ	no	89.51	yes
125438	thermophilic	thermophileⓘ	no	100.00	no
125438	flagellated	motile2+ⓘ	yes	91.84	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Psychrotrophic Antarctic marine bacteria as potential reservoirs for novel antimicrobial genes.	Hwengwere K, January GG, Howell KL, Peck LS, Upton M, Clark MS.	FEMS Microbes	10.1093/femsmc/xtaf004	2025
Genetics	Genome Sequences of 72 Bacterial Strains Isolated from Ectocarpus subulatus: A Resource for Algal Microbiology.	Karimi E, Geslain E, KleinJan H, Tanguy G, Legeay E, Corre E, Dittami SM.	Genome Biol Evol	10.1093/gbe/evz278	2020
Phylogeny	Pseudomonas cuatrocienegasensis sp. nov., isolated from an evaporating lagoon in the Cuatro Cienegas valley in Coahuila, Mexico.	Escalante AE, Caballero-Mellado J, Martinez-Aguilar L, Rodriguez-Verdugo A, Gonzalez-Gonzalez A, Toribio-Jimenez J, Souza V	Int J Syst Evol Microbiol	10.1099/ijs.0.006189-0	2009
Phylogeny	Pseudomonas peli sp. nov. and Pseudomonas borbori sp. nov., isolated from a nitrifying inoculum.	Vanparys B, Heylen K, Lebbe L, De Vos P	Int J Syst Evol Microbiol	10.1099/ijs.0.64224-0	2006

References

#7204	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17833
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28038	IJSEM 1875 2006 ( DOI 10.1099/ijs.0.64224-0 , PubMed 16902024 )
#31765	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28038
#37532	; Curators of the CIP;
#60009	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53775
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121654	Collection of Institut Pasteur ; Curators of the CIP; CIP 109374
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas peli (DSM 17833, CCM 7693, LMG 23201)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_012986145

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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