Pseudomonas alcaliphila (CCUG 54778, KCTC 12910, DSM 17744)

Name: Pseudomonas alcaliphila (CCUG 54778, KCTC 12910, DSM 17744)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13129

Type strain

Strain Designation AL 15-21, AL15-21

Culture col. no. CCUG 54778 KCTC 12910 DSM 17744 IAM 14884 JCM 10630 7 more

NCBI tax ID(s) 1215093 101564

Special Collections DSMZ CCUG JCM KCTC CIP

Links

Pseudomonas alcaliphila AL 15-21 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from seawater.

Gram-negative rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 100883

IAM 14884,JCM 10630,KCTC 12910,LMG 21015,ATCC BAA-571,NCIMB 13898,LMG 23134,DSM 17744,CCUG 0136,NBRC 102411,CCUG 54778,CIP 108031

@ref 20215

Last LPSN update 2025-12-16 09:50:01

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas alcaliphila

Full scientific name Pseudomonas alcaliphila Yumoto et al. 2001

Synonyms (1)

Ectopseudomonas alcaliphila

BacDive ID	Other strains from **Pseudomonas alcaliphila** (4)	Type strain
23212	P. alcaliphila JAB1, DSM 26533
131114	P. alcaliphila NE3B02, DSM 29517
161423	P. alcaliphila JCM 13959
161424	P. alcaliphila JCM 13960

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
116207	negative	rod-shaped
125438	negative		99
125439			95.8
125439	negative		99.9

Pigmentation

@ref	Production	Name
116207		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7164	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
39976	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116207	CIP Medium 469	Medium recipe at CIP
116207	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7164	positive	growth	28	mesophilic
39976	positive	growth	30	mesophilic
60326	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
116207	positive	growth	10-41
116207	negative	growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
60326	aerobe
116207	obligate aerobe
125438	aerobe	91.223

Spore formation

@ref	Spore formation	Confidence
125439		99.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
116207	NaCl	positive	growth	0-6 %
116207	NaCl		growth	8 %
116207	NaCl		growth	10 %

Observation

67770

Observationquinones: Q-9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	+	hydrolysis	from API 20NE
116207	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
116207	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
116207	17632 ChEBI	nitrate	+	reduction
116207	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
116207	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
116207	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
116207	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116207	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
116207	amylase	-
68369	arginine dihydrolase	+	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
116207	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116207	caseinase	+	3.4.21.50
116207	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
116207	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
116207	gelatinase	+/-
68369	gelatinase	-		from API 20NE
116207	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
116207	lipase	+
68382	lipase (C 14)	-		from API zym
116207	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116207	ornithine decarboxylase	-	4.1.1.17
116207	oxidase	+
116207	protease	+
68382	trypsin	+	3.4.21.4	from API zym
116207	tryptophan deaminase	-
116207	tween esterase	-
116207	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116207	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
7164	+	-	-	+	-	-	-	-	+	-	-	+	-	-	+	+	-	+	+	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116207	not determinedn.d.	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	+	+	+	-	+	+	+	-	-	-	-	+	-	+	+	+	-	-	-	-	-	-	+	+	+	-	+	+	+	+	+	+	+	-	+	-	-	-	+	+	+	+	+	+	+	+	+	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
7164	seawater	Rumoi, Hokkaido	Japan	JPN	Asia
60326	Seawater		Japan	JPN	Asia
67770	Seawater	coast of Rumoi, Hokkaido	Japan	JPN	Asia
116207	Environment, Sea water	Rumoi, Hokkaido	Japan	JPN	Asia	1999

Taxonmaps

69479

Global distribution of 16S sequence AB030583 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	2670
Soil Samples	769
Animal Samples	2451
Plant Samples	1575
Total Samples	7465

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7164	1	Risk group (German classification) According to TRBA 466
116207	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2663762780 annotated assembly for Ectopseudomonas alcaliphila JCM 10630	scaffold	GCA_900101755	101564.8	2663762780	101564	73.77
66792	ASM209149v1 assembly for Ectopseudomonas alcaliphila NBRC 102411	contig	GCA_002091495	1215093.3	2806311028	1215093	73.51

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Pseudomonas alcalophila 16S ribosomal RNA, partial sequence	AB030583	1489	101564
20218	Pseudomonas alcaliphila gene for 16S rRNA, partial sequence, strain: NBRC 102411	AB681767	1462	101564
124043	Pseudomonas alcaliphila strain JCM 10630 16S ribosomal RNA gene, partial sequence.	MW111145	680	101564

GC content

@ref	GC-content (mol%)	Method
67770	63.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas alcaliphila JCM 10630
NCBI: GCA_900101755

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	80.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	motility	BacteriaNetⓘ	yes	95.80	no
125439	spore_formation	BacteriaNetⓘ	no	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas alcaliphila NBRC 102411 strain NBRC 102411
PATRIC: 1215093.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	96.80	yes
125438	spore-forming	spore-formingⓘ	no	88.24	no
125438	aerobic	aerobicⓘ	yes	91.22	yes
125438	thermophilic	thermophileⓘ	no	99.30	yes
125438	flagellated	motile2+ⓘ	yes	89.92	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Validation List no. 219. Valid publication of new names and new combinations effectively published outside the IJSEM.	Oren A, Goker M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006452	2024
Phylogeny	Phylogenomics studies and molecular markers reliably demarcate genus Pseudomonas sensu stricto and twelve other Pseudomonadaceae species clades representing novel and emended genera.	Rudra B, Gupta RS.	Front Microbiol	10.3389/fmicb.2023.1273665	2023
	Polystyrene-colonizing bacteria are enriched for long-chain alkane degradation pathways.	Hsueh SW, Jian YH, Fugmann SD, Yang SY.	PLoS One	10.1371/journal.pone.0292137	2023
Phylogeny	Whole-Cell MALDI-TOF MS Versus 16S rRNA Gene Analysis for Identification and Dereplication of Recurrent Bacterial Isolates.	Strejcek M, Smrhova T, Junkova P, Uhlik O.	Front Microbiol	10.3389/fmicb.2018.01294	2018
	Bioremediation of a salty petrochemical wastewater containing bisphenol A by a novel indigenous Pseudomonas pseudoalcaligenes.	Jahanshahi S, Badiefar L, Khodabandeh M, Heidarnia MA, Yakhchali B.	RSC Adv	10.1039/d2ra06206b	2022
Phylogeny	Detection of Diverse Sequence Types of Legionella pneumophila by Legiolert Enzymatic-Based Assay and the Development of a Long-Term Storage Protocol.	Matthews S, Trigui H, Grimard-Conea M, Vallarino Reyes E, Villiard G, Charron D, Bedard E, Faucher S, Prevost M.	Microbiol Spectr	10.1128/spectrum.02118-22	2022
	Bioflocculants Produced by Bacterial Strains Isolated from Palm Oil Mill Effluent for Application in the Removal of Eriochrome Black T Dye from Water.	Abbas SZ, Yong YC, Ali Khan M, Siddiqui MR, Hakami AAH, Alshareef SA, Otero M, Rafatullah M.	Polymers (Basel)	10.3390/polym12071545	2020
Metabolism	Conversion of lignin model compounds by Pseudomonas putida KT2440 and isolates from compost.	Ravi K, Garcia-Hidalgo J, Gorwa-Grauslund MF, Liden G.	Appl Microbiol Biotechnol	10.1007/s00253-017-8211-y	2017
Phylogeny	Toxoflavin secreted by Pseudomonas alcaliphila inhibits the growth of Legionella pneumophila and Vermamoeba vermiformis.	Faucher SP, Matthews S, Nickzad A, Vounba P, Shetty D, Bedard E, Prevost M, Deziel E, Paranjape K	Water Res	10.1016/j.watres.2022.118328	2022
Phylogeny	Isolation of Pseudomonas aromaticivorans sp. nov from a hydrocarbon-contaminated groundwater capable of degrading benzene-, toluene-, m- and p-xylene under microaerobic conditions.	Banerjee S, Bedics A, Toth E, Kriszt B, Soares AR, Boka K, Tancsics A	Front Microbiol	10.3389/fmicb.2022.929128	2022
Phylogeny	Pseudomonas hydrolytica sp. nov., multiple polymer-degrading bacteria isolated from soil in China.	Zhou S, Wang Y, Xia H, Liu D, Chen S, Li F	Int J Syst Evol Microbiol	10.1099/ijsem.0.004129	2020
Phylogeny	Pseudomonas mangrovi sp. nov., isolated from mangrove soil.	Ye Y, Chen C, Ren Y, Wang R, Zhang C, Han S, Ju Z, Zhao Z, Sun C, Wu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003141	2019
Phylogeny	Taxonomic description and draft genome of Pseudomonas sediminis sp. nov., isolated from the rhizospheric sediment of Phragmites karka.	Behera P, Mahapatra M, Seuylemezian A, Vaishampayan P, Ramana VV, Joseph N, Joshi A, Shouche Y, Suar M, Pattnaik AK, Rastogi G	J Microbiol	10.1007/s12275-018-7549-x	2018
Phylogeny	Pseudomonas zhaodongensis sp. nov., isolated from saline and alkaline soils.	Zhang L, Pan Y, Wang K, Zhang X, Zhang C, Zhang S, Fu X, Jiang J	Int J Syst Evol Microbiol	10.1099/ijs.0.000057	2015
Phylogeny	Pseudomonas guguanensis sp. nov., a gammaproteobacterium isolated from a hot spring.	Liu YC, Young LS, Lin SY, Hameed A, Hsu YH, Lai WA, Shen FT, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.047712-0	2013
Phylogeny	Pseudomonas sagittaria sp. nov., a siderophore-producing bacterium isolated from oil-contaminated soil.	Lin SY, Hameed A, Liu YC, Hsu YH, Lai WA, Chen WM, Shen FT, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.045567-0	2012
Phylogeny	Pseudomonas alcaliphila sp. nov., a novel facultatively psychrophilic alkaliphile isolated from seawater.	Yumoto I, Yamazaki K, Hishinuma M, Nodasaka Y, Suemori A, Nakajima K, Inoue N, Kawasaki K	Int J Syst Evol Microbiol	10.1099/00207713-51-2-349	2001

References

#7164	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17744
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#39976	; Curators of the CIP;
#60326	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54778
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116207	Collection of Institut Pasteur ; Curators of the CIP; CIP 108031
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas alcaliphila (CCUG 54778, KCTC 12910, DSM 17744)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900101755

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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