Name: Ancylobacter defluvii SK15
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131284

Type strain:

Species: Ancylobacter defluvii

Strain Designation: SK15

Culture col. no.: DSM 29296, CCUG 63806, VKM B-2789

Strain history: <- N. V. Doronina, Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Science, Pushchino, Russia; SK15

NCBI tax ID(s): 1282440 (species)

SI-ID 402865

DSM 29296, CCUG 63806

Section

Ancylobacter defluvii SK15 is an aerobe, mesophilic bacterium that was isolated from wastes of salt mine.

aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Xanthobacteraceae*
	Genus	*Ancylobacter*
	Species	**Ancylobacter defluvii**
	Full Scientific Name (LPSN)	Ancylobacter defluvii Poroshina et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #63030]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22511]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #22511]

Culture medium growth

[Ref.: #22511]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22511]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22511]			growth	28 °C
[Ref.: #63030]			growth	30 °C

[Ref.: #22511]	Temperature range	mesophilic
[Ref.: #63030]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63030]

Oxygen tolerance

aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #22511]	23291	-	-	-	-	+	-	-	-	+	+	-	+	-	-	+	-	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22511]	Sample type/isolated from	wastes of salt mine
[Ref.: #22511]	Geographic location (country and/or sea, region)	Perm region, Solikamsk
[Ref.: #22511]	Country	Russia
[Ref.: #22511]	Country ISO 3 Code	RUS
[Ref.: #22511]	Continent	Europe

[Ref.: #63030]	Sample type/isolated from	Sludge from saline source
[Ref.: #63030]	Sampling date	2009
[Ref.: #63030]	Geographic location (country and/or sea, region)	Perm region,Solikamsk
[Ref.: #63030]	Country	Russia
[Ref.: #63030]	Country ISO 3 Code	RUS
[Ref.: #63030]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Other	#Mine
#Engineered	#Waste	-
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC243678 (>99% sequence identity) for Ancylobacter from Microbeatlas

Aquatic Samples	63
Soil Samples	31
Animal Samples	24
Plant Samples	10
Total Samples	128

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22511]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22511]	Ancylobacter defluvii strain SK15 from Russia 16S ribosomal RNA gene, partial sequence	KC243678	1381	ENA	1282440 tax ID

Availability in culture collections External links

[Ref.: #22511]

Culture collection no.

DSM 29296, CCUG 63806, VKM B-2789

[Ref.: #89727]

SI-ID 402865

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ancylobacter pratisalsi sp. nov. with plant growth promotion abilities from the rhizosphere of Plantago winteri Wirtg.	Suarez C, Ratering S, Schafer J, Schnell S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002320	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22511

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29296

#63030 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 63806

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89727

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402865.1 )

* These data were automatically processed and therefore are not curated

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