Name: Undibacterium terreum DSM 102222
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131260

Type strain:

Species: Undibacterium terreum

Culture col. no.: DSM 102222, NBRC 108789

Strain history: <- NBRC <- China General Microbiological Culture Collection Center, Institute of Microbiology, Chinese Academy of Sciences, China <- Y.-Q. Liu, State Key Laboratory of Microbial Resources, Chinese Academy of Sciences, Beijing, PR China

NCBI tax ID(s): 1224302 (species)

SI-ID 404391

DSM 102222

Section

Undibacterium terreum DSM 102222 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil at 20-30 cm depth in permafrost wetland.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Undibacterium*
	Species	**Undibacterium terreum**
	Full Scientific Name (LPSN)	Undibacterium terreum Liu et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30769]	Gram stain	negative

[Ref.: #30769]	Cell length	1.8 µm

[Ref.: #30769]	Cell width	0.35 µm

[Ref.: #30769]	Cell shape	rod-shaped

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22487]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22487]

Culture medium growth

[Ref.: #22487]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22487]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22487]			growth	28 °C
[Ref.: #30769]			growth	15-37 °C

[Ref.: #22487]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30769]			optimum	6.5
[Ref.: #30769]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30769]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30769]		NaCl		growth	0-1	%

[Ref.: #30769]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30769]	adipate ChEBI	+	carbon source
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #30769]	arabinose ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #30769]	decanoate ChEBI	+	carbon source
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #30769]	gluconate ChEBI	+	carbon source
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #30769]	glucose ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #30769]	mannose ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #30769]	acid phosphatase	+	3.1.3.2
[Ref.: #30769]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #30769]	catalase	+	1.11.1.6
[Ref.: #30769]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #30769]	urease	+	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #22487]	24303	-	-	-	-	-	-	-	-	+	+	-	-	-	-	+	-	+	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22487]	Sample type/isolated from	soil at 20-30 cm depth in permafrost wetland
[Ref.: #22487]	Geographic location (country and/or sea, region)	Beijicun, Mohe County, Heilongjiang province
[Ref.: #22487]	Country	China
[Ref.: #22487]	Country ISO 3 Code	CHN
[Ref.: #22487]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Permafrost
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Wetland (Swamp)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ417431 (>99% sequence identity) for Undibacterium terreum from Microbeatlas

Aquatic Samples	41
Soil Samples	115
Animal Samples	17
Plant Samples	1
Total Samples	174

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22487]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22487]	Undibacterium terreum strain C3 16S ribosomal RNA gene, partial sequence	JQ417431	1491	ENA	1224302 tax ID

[Ref.: #30769]

GC-content

57.4 mol%

Availability in culture collections External links

[Ref.: #22487]

Culture collection no.

DSM 102222, NBRC 108789

[Ref.: #89704]

SI-ID 404391

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Undibacterium terreum sp. nov., isolated from permafrost soil.	Liu YQ, Wang BJ, Zhou N, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.043927-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22487

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102222

#30769

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27100 (see below)

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89704

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404391.1 )

#27100

IJSEM 2296 2013 ( DOI 10.1099/ijs.0.043927-0 , PubMed 23159755 )

* These data were automatically processed and therefore are not curated

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