Name: Thiofractor thiocaminus 496Chim
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131251

Type strain:

Species: Thiofractor thiocaminus

Strain Designation: 496Chim

Culture col. no.: DSM 22050, JCM 15747, NBRC 105224

Strain history: H. Makita 496Chim.

NCBI tax ID(s): 1095805 (species)

Section

Thiofractor thiocaminus 496Chim is an anaerobe, mesophilic bacterium that was isolated from deep sea hydrothermal vent, chimney surface.

anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Campylobacteraceae*
	Genus	"Thiofractor"
	Species	"Thiofractor thiocaminus"
	Full Scientific Name (LPSN)	Thiofractor thiocaminus Makita et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #16109]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16109]

Culture medium

DESULFOTHERMUS MJ MEDIUM (H2/CO2) (DSMZ Medium 1011c)

[Ref.: #16109]

Culture medium growth

[Ref.: #16109]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16109]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16109]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #16109]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16109]

Oxygen tolerance

anaerobe

[Ref.: #67770]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16109]	Sample type/isolated from	deep sea hydrothermal vent, chimney surface
[Ref.: #16109]	Geographic location (country and/or sea, region)	Pacific Ocean, Northern Mariana Arc region, Nikko Seamount field
[Ref.: #16109]	Country	Japan
[Ref.: #16109]	Country ISO 3 Code	JPN
[Ref.: #16109]	Continent	Asia
[Ref.: #16109]	Geographic location	23.0833°/142.3170°

[Ref.: #67770]	Sample type/isolated from	Deep-sea hydrothermal vent chimney in the Nikko Seamount field of the northern Mariana Arc
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB675079 (>99% sequence identity) for Thiofractor thiocaminus subclade from Microbeatlas

Aquatic Samples	119
Soil Samples	6
Animal Samples	3
Plant Samples
Total Samples	128

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16109]	Thiofractor thiocaminus gene for 16S ribosomal RNA, partial sequence	AB675079	1421	ENA	1095805 tax ID

[Ref.: #16109]

GC-content

34.8 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #16109]

Culture collection no.

DSM 22050, JCM 15747, NBRC 105224

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thiofractor thiocaminus gen. nov., sp. nov., a novel hydrogen-oxidizing, sulfur-reducing epsilonproteobacterium isolated from a deep-sea hydrothermal vent chimney in the Nikko Seamount field of the northern Mariana Arc.	Makita H, Nakagawa S, Miyazaki M, Nakamura K, Inagaki F, Takai K	Arch Microbiol	10.1007/s00203-012-0814-1	2012	*

References

#16109

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22050

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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