Name: Bacteroides stercorirosoris ST161
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131249

Type strain:

Species: Bacteroides stercorirosoris

Strain Designation: ST161

Culture col. no.: DSM 26884, CCUG 60872, JCM 17103

Strain history: M. Kitahara ST161.

NCBI tax ID(s): 1236514 (strain), 871324 (species)

SI-ID 398255

DSM 26884, CCUG 60872

Special Collections

Other strains from Bacteroides stercorirosoris

Section

When using BacDive for research please cite our paper

Bacteroides stercorirosoris ST161 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from faeces of Chinchilla lanigera.

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Bacteroidaceae*
	Genus	*Bacteroides*
	Species	**Bacteroides stercorirosoris**
	Full Scientific Name (LPSN)	Bacteroides stercorirosoris Kitahara et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30294]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %93.195
[Ref.: #125439]	Gram stain	negative Confidence in %97.3

[Ref.: #30294]	Cell length	8.5 µm

[Ref.: #30294]	Cell width	1.2 µm

[Ref.: #30294]	Cell shape	rod-shaped

[Ref.: #30294]	Motility	no

[Ref.: #22477]	Incubation period	1-2 days

[Ref.: #62472]	Incubation period	1 day

[Ref.: #30294]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22477]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #22477]

Culture medium growth

[Ref.: #22477]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22477]

Culture medium composition

expand / minimize

[Ref.: #22477]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #22477]

Culture medium growth

[Ref.: #22477]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22477]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #22477]	growth	37 °C
[Ref.: #30294]	optimum	37 °C
[Ref.: #62472]	growth	37 °C
[Ref.: #67770]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22477]	Oxygen tolerance	anaerobe
[Ref.: #30294]	Oxygen tolerance	anaerobe
[Ref.: #62472]	Oxygen tolerance	anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate anaerobe Confidence in %98.7

[Ref.: #30294]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %99.6

[Ref.: #67770]

Observation

quinones: MK-10, MK-11

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30294]	arabinose ChEBI	+	carbon source
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #30294]	cellobiose ChEBI	+	carbon source
[Ref.: #68367]	D-glucose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-mannitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-mannose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68367]	D-xylose ChEBI	+	builds acid from	* from API 20A
[Ref.: #30294]	esculin ChEBI	+	hydrolysis
[Ref.: #68367]	esculin ChEBI	+	hydrolysis	* from API 20A
[Ref.: #68367]	gelatin ChEBI	+	hydrolysis	* from API 20A
[Ref.: #30294]	glucose ChEBI	+	carbon source
[Ref.: #68367]	glycerol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	L-arabinose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	L-glutamate ChEBI	+	degradation	* from API rID32A
[Ref.: #30294]	lactose ChEBI	+	carbon source
[Ref.: #68367]	lactose ChEBI	+	builds acid from	* from API 20A
[Ref.: #30294]	maltose ChEBI	+	carbon source
[Ref.: #68367]	maltose ChEBI	+	builds acid from	* from API 20A
[Ref.: #30294]	mannose ChEBI	+	carbon source
[Ref.: #68367]	melezitose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #30294]	raffinose ChEBI	+	carbon source
[Ref.: #68367]	raffinose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	raffinose ChEBI	+	fermentation	* from API rID32A
[Ref.: #30294]	rhamnose ChEBI	+	carbon source
[Ref.: #68367]	salicin ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	sorbitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #30294]	sucrose ChEBI	+	carbon source
[Ref.: #68367]	sucrose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	trehalose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68380]	tryptophan ChEBI	+	energy source	* from API rID32A
[Ref.: #68367]	tryptophan ChEBI	-	energy source	* from API 20A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A, API 20A
[Ref.: #30294]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #30294]		indole ChEBI	yes
[Ref.: #68380]		indole ChEBI	yes	* from API rID32A, API 20A

	Metabolite	Indole test
[Ref.: #30294]	indole ChEBI	+
[Ref.: #68380]	indole ChEBI	+	* from API rID32A
[Ref.: #68367]	indole ChEBI	-	* from API 20A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #30294]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #30294]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A, API 20A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68367]	gelatinase	+		* from API 20A
[Ref.: #68380]	glutamate decarboxylase	+	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	+		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	+	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A, API 20A
	Only first 10 entries are displayed. Click here to see all.

API® 20A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Indole productionIND	Urease/urea hydrolysisURE	Acid from D-glucoseGLU	Acid from D-mannitolMAN	Acid from lactoseLAC	Acid from sucroseSAC	Acid from maltoseMAL	Acid from salicinSAL	Acid from D-xyloseXYL	Acid from L-arabinoseARA	Gelatinase/gelatin hydrolysisGEL	Esculin hydrolysis/beta-glucosidaseESC	Acid from glycerolGLY	Acid from cellobioseCEL	Acid from D-mannoseMNE	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from sorbitolSOR	Acid from L-rhamnoseRHA	Acid from trehaloseTRE	CatalaseCAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
[Ref.: #22477]	2345	-	-	+	-	+	+	+	+	+	+	+	+	-	+/-	+	-	+	-	+/-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #22477]	13804	-	-	+	+	-	+/-	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22477]	Sample type/isolated from	faeces of Chinchilla lanigera
[Ref.: #22477]	Host species	Chinchilla lanigera
[Ref.: #22477]	Country	Japan
[Ref.: #22477]	Country ISO 3 Code	JPN
[Ref.: #22477]	Continent	Asia

[Ref.: #62472]	Sample type/isolated from	Chinchilla feces,healthy (Chinchilla lanigera)
[Ref.: #62472]	Geographic location (country and/or sea, region)	Musashino
[Ref.: #62472]	Country	Japan
[Ref.: #62472]	Country ISO 3 Code	JPN
[Ref.: #62472]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Feces of a chinchilla
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Rodentia (Other)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB574481 (>99% sequence identity) for Bacteroides stercorirosoris from Microbeatlas

Aquatic Samples	254
Soil Samples	101
Animal Samples	20384
Plant Samples	66
Total Samples	20805

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22477]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22477]	Bacteroides stercorirosoris gene for 16S rRNA, partial sequence	AB574481	1484	GenBank ENA	1236514 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacteroides stercorirosoris JCM 17103	GCA_000614165	contig	GenBank ENA	1236514 tax ID
[Ref.: #67770]	Bacteroides stercorirosoris DSM 26884	GCA_900142015	contig	GenBank ENA	871324 tax ID
[Ref.: #66792]	Bacteroides stercorirosoris JCM 17103	1236514.3	wgs	PATRIC	1236514 tax ID	*
[Ref.: #66792]	Bacteroides stercorirosoris strain DSM 26884	871324.4	wgs	PATRIC	871324 tax ID	*
[Ref.: #66792]	Bacteroides stercorirosoris JCM 17103	2585427867	draft	JGI IMG/M	1236514 tax ID	*
[Ref.: #66792]	Bacteroides stercorirosoris DSM 26884	2700988705	draft	JGI IMG/M	871324 tax ID	*

[Ref.: #22477]	GC-content	45.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30294]	GC-content	45.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacteroides stercorirosoris JCM 17103 PATRIC: 1236514.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	93.195	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	85.085	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	86.664	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	92.331	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	93.792	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	87	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacteroides stercorirosoris JCM 17103 NCBI: GCA_000614165
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate anaerobe	98.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	97.3
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	78.3
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.6

Availability in culture collections External links

[Ref.: #22477]

Culture collection no.

DSM 26884, CCUG 60872, JCM 17103

[Ref.: #89694]

SI-ID 398255

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacteroides stercorirosoris sp. nov. and Bacteroides faecichinchillae sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces.	Kitahara M, Sakamoto M, Tsuchida S, Kawasumi K, Amao H, Benno Y, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijs.0.032706-0	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22477

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26884

#30294

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26635 (see below)

#62472 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60872

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68367

Automatically annotated from API 20A .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89694

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398255.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#26635

IJSEM 1145 2012 ( DOI 10.1099/ijs.0.032706-0 , PubMed 21724955 )

* These data were automatically processed and therefore are not curated

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Search for species Bacteroides stercorirosoris in external resources:
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Bacteroides stercorirosoris JCM 17103

Bacteroides stercorirosoris JCM 17103

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