Bacteroides stercorirosoris (DSM 26884, CCUG 60872, JCM 17103)

Name: Bacteroides stercorirosoris (DSM 26884, CCUG 60872, JCM 17103)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131249

Type strain

Strain Designation ST161

Culture col. no. DSM 26884 CCUG 60872 JCM 17103 ST161

NCBI tax ID(s) 1236514 871324

Special Collections DSMZ CCUG JCM Literature strains

History DSMZ <- JCM <- M. Kitahara, RIKEN, Wako, Saitama, Japan; ST161 JCM <-- M. Kitahara ST161.

Links

Bacteroides stercorirosoris ST161 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from faeces of Chinchilla lanigera.

Gram-negative rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398255

JCM 17103,DSM 26884,CCUG 60872

@ref 20215

Last LPSN update 2026-05-29 08:37:34

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Bacteroidaceae

Genus Bacteroides

Species Bacteroides stercorirosoris

Full scientific name Bacteroides stercorirosoris Kitahara et al. 2012

BacDive ID	Other strains from **Bacteroides stercorirosoris** (1)	Type strain
161932	B. stercorirosoris JCM 17101

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30294	negative	8.5 µm	1.2 µm	rod-shaped
125439	negative				95.947
125438	negative				93.195

Colony morphology

@ref	Incubation period
22477	1-2 days
62472	1 day

Pigmentation

30294

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22477	CHOPPED MEAT MEDIUM (DSMZ Medium 78)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water
22477	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
22477	positive	growth	37
30294	positive	optimum	37
62472	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
22477	anaerobe
30294	anaerobe
62472	anaerobe
125439	obligate anaerobe	91.064

Spore formation

@ref	Spore formation	Confidence
30294
125439		99.849

Observation

67770

Observationquinones: MK-10, MK-11

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30294	22599 ChEBI	arabinose	+	carbon source
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
30294	17057 ChEBI	cellobiose	+	carbon source
68367	17634 ChEBI	D-glucose	+	builds acid from	from API 20A
68367	16899 ChEBI	D-mannitol	-	builds acid from	from API 20A
68380	16024 ChEBI	D-mannose	+	fermentation	from API rID32A
68367	16024 ChEBI	D-mannose	+	builds acid from	from API 20A
68367	65327 ChEBI	D-xylose	+	builds acid from	from API 20A
30294	4853 ChEBI	esculin	+	hydrolysis
68367	4853 ChEBI	esculin	+	hydrolysis	from API 20A
68367	5291 ChEBI	gelatin	+	hydrolysis	from API 20A
30294	17234 ChEBI	glucose	+	carbon source
68367	17754 ChEBI	glycerol	-	builds acid from	from API 20A
68367	30849 ChEBI	L-arabinose	+	builds acid from	from API 20A
68380	29985 ChEBI	L-glutamate	+	degradation	from API rID32A
30294	17716 ChEBI	lactose	+	carbon source
68367	17716 ChEBI	lactose	+	builds acid from	from API 20A
30294	17306 ChEBI	maltose	+	carbon source
68367	17306 ChEBI	maltose	+	builds acid from	from API 20A
30294	37684 ChEBI	mannose	+	carbon source
68367	6731 ChEBI	melezitose	-	builds acid from	from API 20A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
30294	16634 ChEBI	raffinose	+	carbon source
68380	16634 ChEBI	raffinose	+	fermentation	from API rID32A
68367	16634 ChEBI	raffinose	+	builds acid from	from API 20A
30294	26546 ChEBI	rhamnose	+	carbon source
68367	17814 ChEBI	salicin	+	builds acid from	from API 20A
68367	30911 ChEBI	sorbitol	-	builds acid from	from API 20A
30294	17992 ChEBI	sucrose	+	carbon source
68367	17992 ChEBI	sucrose	+	builds acid from	from API 20A
68367	27082 ChEBI	trehalose	-	builds acid from	from API 20A
68380	27897 ChEBI	tryptophan	+	energy source	from API rID32A
68367	27897 ChEBI	tryptophan	-	energy source	from API 20A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
68367	16199 ChEBI	urea	-	hydrolysis	from API 20A
30294	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite
30294	35581 ChEBI	indole
68380	35581 ChEBI	indole	from API rID32A
68367	35581 ChEBI	indole	from API 20A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
30294	35581 ChEBI	indole	+
68380	35581 ChEBI	indole	+	from API rID32A
68367	35581 ChEBI	indole	-	from API 20A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
30294	alkaline phosphatase	+	3.1.3.1
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	+	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
30294	alpha-galactosidase	+	3.2.1.22
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68367	beta-glucosidase	+	3.2.1.21	from API 20A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68367	gelatinase	+		from API 20A
68380	glutamate decarboxylase	+	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	+		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	+	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A
68367	urease	-	3.5.1.5	from API 20A

API 20A

@ref	IND	URE	GLU	MAN	LAC	SAC	MAL	SAL	XYL	ARA	GEL	ESC	GLY	CEL	MNE	MLZ	RAF	SOR	RHA	TRE	CAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
22477	-	-	+	-	+	+	+	+	+	+	+	+	-	+/-	+	-	+	-	+/-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
22477	-	-	+	+	-	+/-	+	+	-	+	+	+	+	-	-	+	+	-	-	+	-	-	-	-	+	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Rodentia (Other)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Geographic location
22477	faeces of Chinchilla lanigera	Chinchilla lanigera	Japan	JPN	Asia
62472	Chinchilla feces,healthy (Chinchilla lanigera)		Japan	JPN	Asia	Musashino
67770	Feces of a chinchilla

Taxonmaps

69479

Global distribution of 16S sequence AB574481 (>99% sequence identity) for Bacteroides stercorirosoris from Microbeatlas

Aquatic Samples	254
Soil Samples	101
Animal Samples	20384
Plant Samples	66
Total Samples	20805

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22477	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2700988705 annotated assembly for Bacteroides stercorirosoris DSM 26884	contig	GCA_900142015	871324.4	2700988705	871324	61.52
67770	ASM61416v1 assembly for Bacteroides stercorirosoris JCM 17103	contig	GCA_000614165	1236514.3	2585427867	1236514	19.67

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22477	Bacteroides stercorirosoris gene for 16S rRNA, partial sequence	AB574481	1484		1236514

GC content

@ref	GC-content (mol%)	Method
22477	45.7	high performance liquid chromatography (HPLC)
30294	45.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: IMG-taxon 2700988705 annotated assembly for Bacteroides stercorirosoris DSM 26884
NCBI: GCA_900142015

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	91.06	no
125439	gram_stain	BacteriaNetⓘ	negative	95.95	no
125439	spore_formation	BacteriaNetⓘ	no	99.85	no
125439	motility	BacteriaNetⓘ	no	80.12	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacteroides stercorirosoris JCM 17103
PATRIC: 1236514.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	93.20	yes
125438	anaerobic	anaerobicⓘ	yes	85.09	yes
125438	spore-forming	spore-formingⓘ	no	86.66	yes
125438	aerobic	aerobicⓘ	no	92.33	yes
125438	thermophilic	thermophileⓘ	no	93.79	yes
125438	flagellated	motile2+ⓘ	no	87.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.	Nakamura S, Kurata R, Tonozuka T, Funane K, Park EY, Miyazaki T.	J Biol Chem	10.1016/j.jbc.2023.104885	2023
Proteome	Three alginate lyases provide a new gut Bacteroides ovatus isolate with the ability to grow on alginate.	Ronne ME, Tandrup T, Madsen M, Hunt CJ, Myers PN, Moll JM, Holck J, Brix S, Strube ML, Aachmann FL, Wilkens C, Svensson B.	Appl Environ Microbiol	10.1128/aem.01185-23	2023
	Complete Genome Sequence of a New Bacteroidaceae Bacterium Isolated from Anaerobic Biomass Digestion.	Hahnke S, Abendroth C, Pascual J, Langer T, Codoner FM, Ramm P, Klocke M, Luschnig O, Porcar M.	Microbiol Resour Announc	10.1128/mra.01203-19	2019
Phylogeny	Bacteroides stercorirosoris sp. nov. and Bacteroides faecichinchillae sp. nov., isolated from chinchilla (Chinchilla lanigera) faeces.	Kitahara M, Sakamoto M, Tsuchida S, Kawasumi K, Amao H, Benno Y, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijs.0.032706-0	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22477	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26884
#26635	IJSEM 1145 2012 ( DOI 10.1099/ijs.0.032706-0 , PubMed 21724955 )
#30294	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26635
#62472	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60872
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68367	Automatically annotated from API 20A .
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacteroides stercorirosoris (DSM 26884, CCUG 60872, JCM 17103)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20A

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900142015

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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