Name: Shouchella xiaoxiensis DSM 21943
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1312

Type strain:

Species: Shouchella xiaoxiensis

Culture col. no.: DSM 21943, CCTCC AA 208057, JSM 081004

Strain history: <- S.-K. Tang and Y.-G. Chen, YIM <- Y.-G. Chen and H.-D. Xiao, YIM

NCBI tax ID(s): 766895 (species)

SI-ID 399507

DSM 21943

Section

Shouchella xiaoxiensis DSM 21943 is a spore-forming, mesophilic, motile bacterium that was isolated from forest soil.

motile
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Shouchella*
	Species	**Shouchella xiaoxiensis**
	Full Scientific Name (LPSN)	Shouchella xiaoxiensis (Chen et al. 2011) Joshi et al. 2022

	Synonym	Alkalihalobacillus xiaoxiensis
	Synonym	Bacillus xiaoxiensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %95.377

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16060]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16060]

Culture medium growth

[Ref.: #16060]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16060]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16060]			growth	28 °C

[Ref.: #16060]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16060]	Sample type/isolated from	forest soil
[Ref.: #16060]	Geographic location (country and/or sea, region)	Hunan Province, Xiaoxi National Natural Reserve
[Ref.: #16060]	Country	China
[Ref.: #16060]	Country ISO 3 Code	CHN
[Ref.: #16060]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM054474 (>99% sequence identity) for Alkalihalobacillus from Microbeatlas

Aquatic Samples	120
Soil Samples	196
Animal Samples	384
Plant Samples	68
Total Samples	768

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16060]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16060]	Bacillus xiaoxiensis strain JSM 081004 16S ribosomal RNA gene, partial sequence	HM054474	1467	ENA	766895 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shouchella xiaoxiensis DSM 21943	GCA_016907895	contig	GenBank	766895 tax ID	*
[Ref.: #66792]	Alkalihalobacillus xiaoxiensis strain DSM 21943	766895.3	wgs	PATRIC	766895 tax ID	*
[Ref.: #66792]	Alkalihalobacillus xiaoxiensis DSM 21943	2898005585	draft	JGI IMG/M	766895 tax ID	*

[Ref.: #16060]

GC-content

40.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alkalihalobacillus xiaoxiensis strain DSM 21943 PATRIC: 766895.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alkalihalobacillus xiaoxiensis strain DSM 21943 PATRIC: 766895.3
[Ref.: #69480]	motile	yes	90.573	no
[Ref.: #69480]	flagellated	yes	64.298	no
[Ref.: #69480]	gram-positive	yes	88.496	no
[Ref.: #69480]	anaerobic	no	99.43	no
[Ref.: #69480]	halophile	yes	87.877	no
[Ref.: #69480]	spore-forming	yes	95.486	no
[Ref.: #69480]	glucose-util	yes	90.465	no
[Ref.: #69480]	aerobic	yes	92.267	no
[Ref.: #69480]	thermophile	no	99.705	yes
[Ref.: #69480]	glucose-ferment	no	92.175	no

Availability in culture collections External links

[Ref.: #16060]

Culture collection no.

DSM 21943, CCTCC AA 208057, JSM 081004

[Ref.: #70963]

SI-ID 399507

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus shacheensis sp. nov., a moderately halophilic bacterium isolated from a saline-alkali soil.	Lei Z, Qiu P, Ye R, Tian J, Liu Y, Wang L, Tang SK, Li WJ, Tian Y	J Gen Appl Microbiol	DN/JST.JSTAGE/jgam/60.101	2014	*
Phylogeny	Bacillus xiaoxiensis sp. nov., a slightly halophilic bacterium isolated from non-saline forest soil.	Chen YG, Zhang YQ, Chen QH, Klenk HP, He JW, Tang SK, Cui XL, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.026286-0	2010	*

References

#16060

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21943

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70963

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399507.1 )

* These data were automatically processed and therefore are not curated

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Alkalihalobacillus xiaoxiensis strain DSM 21943

Alkalihalobacillus xiaoxiensis strain DSM 21943

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