Name: Rhodocytophaga aerolata 5416T-29
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131179

Type strain:

Species: Rhodocytophaga aerolata

Strain Designation: 5416T-29

Culture col. no.: DSM 22190, KACC 12507

Strain history: <- S.-W. Kwon, KACC; 5416T-29 <- H.-Y. Weon

NCBI tax ID(s): 455078 (species)

SI-ID 397087

DSM 22190

Section

Rhodocytophaga aerolata 5416T-29 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from air.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	"Rhodocytophagaceae"
	Genus	*Rhodocytophaga*
	Species	**Rhodocytophaga aerolata**
	Full Scientific Name (LPSN)	Rhodocytophaga aerolata Anandham et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29536]	Gram stain	negative

[Ref.: #29536]	Cell length	13.75 µm

[Ref.: #29536]	Cell width	0.6 µm

[Ref.: #29536]	Cell shape	rod-shaped

[Ref.: #29536]	Motility	no

[Ref.: #29536]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22471]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22471]

Culture medium growth

[Ref.: #22471]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22471]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #22471]	growth	30 °C
[Ref.: #29536]	growth	10-35 °C
[Ref.: #29536]	optimum	30 °C

[Ref.: #22471]	Temperature range	mesophilic
[Ref.: #29536]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29536]			optimum	7
[Ref.: #29536]			growth	07-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29536]

Oxygen tolerance

aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29536]	glucose ChEBI	+	carbon source
[Ref.: #29536]	maltose ChEBI	+	carbon source
[Ref.: #29536]	mannose ChEBI	+	carbon source
[Ref.: #29536]	melibiose ChEBI	+	carbon source
[Ref.: #29536]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29536]	rhamnose ChEBI	+	carbon source
[Ref.: #29536]	salicin ChEBI	+	carbon source
[Ref.: #29536]	sucrose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29536]	acid phosphatase	+	3.1.3.2
[Ref.: #29536]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29536]	alpha-galactosidase	+	3.2.1.22
[Ref.: #29536]	catalase	+	1.11.1.6
[Ref.: #29536]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22471]	Sample type/isolated from	air
[Ref.: #22471]	Geographic location (country and/or sea, region)	Suwon city
[Ref.: #22471]	Country	Republic of Korea
[Ref.: #22471]	Country ISO 3 Code	KOR
[Ref.: #22471]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Air

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU004198 (>99% sequence identity) for Rhodocytophaga aerolata subclade from Microbeatlas

Aquatic Samples	43
Soil Samples	322
Animal Samples	191
Plant Samples	22
Total Samples	578

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22471]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22471]	Rhodocytophaga aerolata strain 5416T-29 16S ribosomal RNA gene, partial sequence	EU004198	1416	ENA	455078 tax ID

[Ref.: #22471]	GC-content	45.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29536]	GC-content	45.5 mol%

Availability in culture collections External links

[Ref.: #22471]

Culture collection no.

DSM 22190, KACC 12507

[Ref.: #89624]

SI-ID 397087

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodocytophaga rosea sp. nov. and Nibribacter ruber sp. nov., two radiation-resistant bacteria isolated from soil.	Park Y, Maeng S, Han JH, Lee SE, Zhang J, Kim MK, Cha IT, Lee KE, Lee BH, Kim MK	Antonie Van Leeuwenhoek	10.1007/s10482-020-01488-1	2020	*
Phylogeny	Rhodocytophaga aerolata gen. nov., sp. nov., a new member of the family Cytophagaceae isolated from air.	Anandham R, Weon HY, Kim SJ, Kim YS, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.015305-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22471

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22190

#29536

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25933 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89624

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397087.1 )

#25933

IJSEM 1554 2010 ( DOI 10.1099/ijs.0.015305-0 , PubMed 19684325 )

* These data were automatically processed and therefore are not curated

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