Name: Formosa algae DSM 16476
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131144

Type strain:

Species: Formosa algae

Variant: Isotype of BacDive ID 132845

Culture col. no.: DSM 16476, KMM 3553

Strain history: 2002, E. Ivanova, Swinburne Inst., Victoria, Australia: strain: F89

NCBI tax ID(s): 225843 (species)

SI-ID 403237

DSM 16476

Other strains from Formosa algae

F. algae F89, DSM 15523, KMM 3553, KMM 3557 (type strain)
F. algae F89, CIP 107684 (type strain)

Section

Formosa algae DSM 16476 is a facultative aerobe, mesophilic, Gram-negative bacterium that was isolated from From brown algae Fucus evanescens.

Gram-negative
motile
rod-shaped
facultative aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Formosa*
	Species	**Formosa algae**
	Full Scientific Name (LPSN)	Formosa algae Ivanova et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #29971]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.92

[Ref.: #29971]	Cell length	1.3 µm

[Ref.: #29971]	Cell width	0.65 µm

[Ref.: #29971]	Cell shape	rod-shaped

[Ref.: #29971]	Motility	yes

[Ref.: #29971]	Flagellum arrangement	gliding

[Ref.: #29971]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22436]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #22436]

Culture medium growth

[Ref.: #22436]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22436]

Culture medium composition

expand / minimize

[Ref.: #33156]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33156]

Culture medium growth

[Ref.: #33156]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #22436]	growth	25 °C
[Ref.: #29971]	growth	05-35 °C
[Ref.: #29971]	optimum	23 °C
[Ref.: #33156]	growth	25 °C

[Ref.: #22436]	Temperature range	mesophilic
[Ref.: #29971]	Temperature range	psychrophilic
[Ref.: #33156]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29971]			optimum	8.25
[Ref.: #29971]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29971]

Oxygen tolerance

facultative aerobe

[Ref.: #29971]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.96

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29971]		NaCl		growth	0-6	%
[Ref.: #29971]		NaCl		optimum	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29971]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #29971]	citrate ChEBI	+	carbon source
[Ref.: #29971]	galactose ChEBI	+	carbon source
[Ref.: #29971]	gelatin ChEBI	+	carbon source
[Ref.: #29971]	glucose ChEBI	+	carbon source
[Ref.: #29971]	glycerol ChEBI	+	carbon source
[Ref.: #29971]	L-alaninamide ChEBI	+	carbon source
[Ref.: #29971]	lactose ChEBI	+	carbon source
[Ref.: #29971]	nitrate ChEBI	+	reduction
[Ref.: #29971]	ornithine ChEBI	+	carbon source
[Ref.: #29971]	proline ChEBI	+	carbon source
[Ref.: #29971]	succinate ChEBI	+	carbon source
[Ref.: #29971]	thymidine ChEBI	+	carbon source
[Ref.: #29971]	tween 40 ChEBI	+	carbon source
[Ref.: #29971]	urea ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29971]	catalase	+	1.11.1.6
[Ref.: #29971]	gelatinase	+
[Ref.: #29971]	urease	+	3.5.1.5

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	tetrahydrofolate metabolism	92.86	13 of 14
[Ref.: #66794]	palmitate biosynthesis	90.91	20 of 22
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	starch degradation	80	8 of 10
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	vitamin K metabolism	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	purine metabolism	73.4	69 of 94
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	lipid metabolism	70.97	22 of 31
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	non-pathway related	68.42	26 of 38
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	flavin biosynthesis	66.67	10 of 15
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	alanine metabolism	62.07	18 of 29
[Ref.: #66794]	leucine metabolism	61.54	8 of 13
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	histidine metabolism	58.62	17 of 29
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	tryptophan metabolism	57.89	22 of 38
[Ref.: #66794]	methionine metabolism	57.69	15 of 26
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	57.14	4 of 7
[Ref.: #66794]	degradation of hexoses	55.56	10 of 18
[Ref.: #66794]	molybdenum cofactor biosynthesis	55.56	5 of 9
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	myo-inositol biosynthesis	50	5 of 10
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	glutathione metabolism	50	7 of 14
[Ref.: #66794]	cysteine metabolism	50	9 of 18
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	50	1 of 2
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	lysine metabolism	50	21 of 42
[Ref.: #66794]	pentose phosphate pathway	45.45	5 of 11
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	arachidonic acid metabolism	44.44	8 of 18
[Ref.: #66794]	degradation of pentoses	42.86	12 of 28
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	oxidative phosphorylation	39.56	36 of 91
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	38.46	5 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	degradation of sugar acids	36	9 of 25
[Ref.: #66794]	polyamine pathway	34.78	8 of 23
[Ref.: #66794]	isoprenoid biosynthesis	34.62	9 of 26
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	carotenoid biosynthesis	31.82	7 of 22
[Ref.: #66794]	degradation of sugar alcohols	31.25	5 of 16
[Ref.: #66794]	urea cycle	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22436]	Sample type/isolated from	From brown algae Fucus evanescens
[Ref.: #22436]	Host species	Fucus evanescens
[Ref.: #22436]	Geographic location (country and/or sea, region)	Kraternaya Bay, Kuril Islands
[Ref.: #22436]	Country	Russia
[Ref.: #22436]	Country ISO 3 Code	RUS
[Ref.: #22436]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Algae

#Brown Algae

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22436]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22436]	Formosa algae KMM 3553 16S ribosomal RNA gene, partial sequence	AY228461	1515	ENA	225843 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Formosa algae KMM 3553	GCA_001439665	contig	GenBank	225843 tax ID	*
[Ref.: #66792]	Formosa algae strain KMM 3553	225843.5	wgs	PATRIC	225843 tax ID	*
[Ref.: #66792]	Formosa algae DSM 16476	2926654377	draft	JGI IMG/M	225843 tax ID	*
[Ref.: #66792]	Formosa algae KMM 3553	2724678980	draft	JGI IMG/M	225843 tax ID	*

[Ref.: #29971]

GC-content

34 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Formosa algae strain KMM 3553 PATRIC: 225843.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Formosa algae strain KMM 3553 PATRIC: 225843.5
[Ref.: #69480]	motile	no	85.727	no
[Ref.: #69480]	gram-positive	no	98.161	yes
[Ref.: #69480]	anaerobic	no	99.33	yes
[Ref.: #69480]	aerobic	yes	85.717	no
[Ref.: #69480]	halophile	no	63.429	no
[Ref.: #69480]	spore-forming	no	95.326	yes
[Ref.: #69480]	glucose-util	yes	89.193	yes
[Ref.: #69480]	flagellated	no	93.405	no
[Ref.: #69480]	thermophile	no	99.868	yes
[Ref.: #69480]	glucose-ferment	no	87.066	no

Availability in culture collections External links

[Ref.: #22436]

Culture collection no.

DSM 16476, KMM 3553

[Ref.: #89597]

SI-ID 403237

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Enzymology	Expression and biochemical characterization and substrate specificity of the fucoidanase from Formosa algae.	Silchenko AS, Ustyuzhanina NE, Kusaykin MI, Krylov VB, Shashkov AS, Dmitrenok AS, Usoltseva RV, Zueva AO, Nifantiev NE, Zvyagintseva TN	Glycobiology	10.1093/glycob/cww138	2017	*
Phylogeny	Formosa spongicola sp. nov., isolated from the marine sponge Hymeniacidon flavia.	Yoon BJ, Oh DC	Int J Syst Evol Microbiol	10.1099/ijs.0.023499-0	2010	*
Phylogeny	Formosa agariphila sp. nov., a budding bacterium of the family Flavobacteriaceae isolated from marine environments, and emended description of the genus Formosa.	Nedashkovskaya OI, Kim SB, Vancanneyt M, Snauwaert C, Lysenko AM, Rohde M, Frolova GM, Zhukova NV, Mikhailov VV, Bae KS, Oh HW, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.63875-0	2006	*
Phylogeny	Formosa sediminum sp. nov., a starch-degrading bacterium isolated from marine sediment.	Han B, Kim M, Lee KE, Lee BH, Lee EY, Park SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004012	2020	*
Enzymology	Two New Alginate Lyases of PL7 and PL6 Families from Polysaccharide-Degrading Bacterium Formosa algae KMM 3553(T): Structure, Properties, and Products Analysis.	Belik A, Silchenko A, Malyarenko O, Rasin A, Kiseleva M, Kusaykin M, Ermakova S	Mar Drugs	10.3390/md18020130	2020	*
Enzymology	Sulfated steroids of Halichondriidae family sponges - Natural inhibitors of polysaccharide-degrading enzymes of bacterium Formosa algae, inhabiting brown alga Fucus evanescens.	Belik AA, Tabakmakher KM, Silchenko AS, Makarieva TN, Minh CV, Ermakova SP, Zvyagintseva TN	Carbohydr Res	10.1016/j.carres.2019.107776	2019	*
Enzymology	A new recombinant endo-1,3-beta-D-glucanase from the marine bacterium Formosa algae KMM 3553: enzyme characteristics and transglycosylation products analysis.	Kusaykin MI, Belik AA, Kovalchuk SN, Dmitrenok PS, Rasskazov VA, Isakov VV, Zvyagintseva TN	World J Microbiol Biotechnol	10.1007/s11274-017-2213-x	2017	*
Metabolism	Hydrolysis of fucoidan by fucoidanase isolated from the marine bacterium, Formosa algae.	Silchenko AS, Kusaykin MI, Kurilenko VV, Zakharenko AM, Isakov VV, Zaporozhets TS, Gazha AK, Zvyagintseva TN	Mar Drugs	10.3390/md11072413	2013	*
Phylogeny	Formosa algae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae.	Ivanova EP, Alexeeva YV, Flavier S, Wright JP, Zhukova NV, Gorshkova NM, Mikhailov VV, Nicolau DV, Christen R	Int J Syst Evol Microbiol	10.1099/ijs.0.02763-0	2004	*
	Two GH16 Endo-1,3-beta-D-Glucanases from Formosa agariphila and F. algae Bacteria Have Complete Different Modes of Laminarin Digestion.	Belik AA, Rasin AB, Kusaykin MI, Ermakova SP	Mol Biotechnol	10.1007/s12033-021-00421-9	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22436

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16476

#29971

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26340 (see below)

#33156 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89597

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403237.1 )

#26340

IJSEM 705 2004 ( DOI 10.1099/ijs.0.02763-0 , PubMed 15143012 )

* These data were automatically processed and therefore are not curated

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Formosa algae strain KMM 3553

Formosa algae strain KMM 3553

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