Name: Microvirga flocculans TFB
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131143

Type strain:

Species: Microvirga flocculans

Strain Designation: TFB

Variant: Isotype of BacDive ID 130401

Culture col. no.: DSM 15743

Strain history: <- M. Takeda, Division of Materials Science and Chemical Engineering, Faculty of Engineering, Yokohama National University; TFB. Deposited as a Methylobacterium sp.

NCBI tax ID(s): 217168 (species)

SI-ID 404663

DSM 15743

Other strains from Microvirga flocculans

M. flocculans TFB, DSM 28869, ATCC BAA-817, CIP ... (type strain)

Section

Microvirga flocculans TFB is a thermophilic, Gram-negative bacterium that was isolated from Hot spring water.

Gram-negative
thermophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylobacteriaceae*
	Genus	*Microvirga*
	Species	**Microvirga flocculans**
	Full Scientific Name (LPSN)	Microvirga flocculans (Takeda et al. 2004) Weon et al. 2010

	Synonym	Balneimonas flocculans
	Synonym	Balneomonas flocculans

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.992

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22435]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #22435]

Culture medium growth

[Ref.: #22435]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22435]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22435]			growth	43 °C

[Ref.: #22435]

Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22435]	Sample type/isolated from	Hot spring water
[Ref.: #22435]	Geographic location (country and/or sea, region)	Gunma Prefecture
[Ref.: #22435]	Country	Japan
[Ref.: #22435]	Country ISO 3 Code	JPN
[Ref.: #22435]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22435]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microvirga flocculans DSM 15743	GCA_014196145	scaffold	GenBank	217168 tax ID	*
[Ref.: #66792]	Microvirga flocculans strain DSM 15743	217168.4	wgs	PATRIC	217168 tax ID	*
[Ref.: #66792]	Microvirga flocculans DSM 15743	2829814883	draft	JGI IMG/M	217168 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microvirga flocculans DSM 15743 NCBI: GCA_014196145.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microvirga flocculans DSM 15743 NCBI: GCA_014196145.1
[Ref.: #69480]	flagellated	no	72.26	no
[Ref.: #69480]	gram-positive	no	97.946	no
[Ref.: #69480]	anaerobic	no	97.949	no
[Ref.: #69480]	aerobic	yes	90.046	no
[Ref.: #69480]	halophile	no	89.361	no
[Ref.: #69480]	spore-forming	no	94.861	no
[Ref.: #69480]	glucose-util	yes	87.988	no
[Ref.: #69480]	thermophile	no	50	yes
[Ref.: #69480]	motile	yes	65.733	no
[Ref.: #69480]	glucose-ferment	no	90.788	no

Availability in culture collections External links

[Ref.: #22435]

Culture collection no.

DSM 15743

[Ref.: #89596]

SI-ID 404663

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22435

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15743

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89596

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404663.1 )

* These data were automatically processed and therefore are not curated

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Microvirga flocculans DSM 15743

Microvirga flocculans DSM 15743

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