Name: Campylobacter lanienae DSM 101946
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131136

Type strain:

Species: Campylobacter lanienae

Culture col. no.: DSM 101946, NCTC 13004, CCUG 44467, CIP 106785

Strain history: CIP <- 2002, CCUG <- 1990, LMG <- A. Burnens, VBI, Berne, Switzerland

NCBI tax ID(s): 1031753 (strain), 75658 (species)

SI-ID 26326

NCTC 13004, CIP 106585, CCUG 44467, CIP 106785, DSM 101946

Section

Campylobacter lanienae DSM 101946 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from faecal sample of healthy, 21-year-old abattoir worker.

Gram-negative
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Campylobacteraceae*
	Genus	*Campylobacter*
	Species	**Campylobacter lanienae**
	Full Scientific Name (LPSN)	Campylobacter lanienae Logan et al. 2000

Information on morphological and physiological properties Morphology

[Ref.: #120556]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.988

[Ref.: #120556]	Cell shape	rod-shaped

[Ref.: #120556]	Motility	yes

[Ref.: #22428]	Incubation period	1-2 days

[Ref.: #56327]	Incubation period	2-4 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22428]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #22428]

Culture medium growth

[Ref.: #22428]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22428]

Culture medium composition

expand / minimize

[Ref.: #39581]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #39581]

Culture medium growth

[Ref.: #39581]

Culture medium composition

expand / minimize

[Ref.: #120556]

Culture medium

Brucella broth

[Ref.: #120556]

Culture medium growth

[Ref.: #120556]

Culture medium

CIP Medium 6

[Ref.: #120556]

Culture medium growth

[Ref.: #120556]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #22428]		growth	37 °C
[Ref.: #39581]		growth	37 °C
[Ref.: #56327]		growth	37-42 °C
[Ref.: #120556]		growth	37-41 °C
[Ref.: #120556]	no	growth	5 °C
[Ref.: #120556]	no	growth	10 °C
[Ref.: #120556]	no	growth	25 °C
[Ref.: #120556]	no	growth	30 °C
[Ref.: #120556]	no	growth	45 °C

[Ref.: #22428]	Temperature range	mesophilic
[Ref.: #39581]	Temperature range	mesophilic
[Ref.: #120556]	Temperature range	psychrophilic
[Ref.: #120556]	Temperature range	mesophilic
[Ref.: #120556]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22428]	Oxygen tolerance	microaerophile
[Ref.: #56327]	Oxygen tolerance	microaerophile
[Ref.: #120556]	Oxygen tolerance	microaerophile

[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.991

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #120556]		NaCl	no	growth	3.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68373]	acetate ChEBI	-	assimilation	* from API CAM
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68373]	citrate ChEBI	-	assimilation	* from API CAM
[Ref.: #68373]	D-glucose ChEBI	-	assimilation	* from API CAM
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68373]	hippurate ChEBI	-	hydrolysis	* from API CAM
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68373]	malate ChEBI	-	assimilation	* from API CAM
[Ref.: #120556]	nitrate ChEBI	+	reduction
[Ref.: #68373]	nitrate ChEBI	+	reduction	* from API CAM
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #120556]	nitrite ChEBI	-	reduction
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68373]	urea ChEBI	-	hydrolysis	* from API CAM, API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance
[Ref.: #120556]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no			yes
[Ref.: #68373]		nalidixic acid ChEBI	yes	84	µg		* from API CAM

	Metabolite	Production
[Ref.: #120556]	indole ChEBI	no
[Ref.: #68373]	hydrogen sulfide ChEBI	no	* from API CAM
[Ref.: #68380]	indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A, API CAM, API zym
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A, API zym
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A, API zym
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A, API zym
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A, API zym
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A, API zym
[Ref.: #22428]	catalase	+	1.11.1.6
[Ref.: #120556]	catalase	+	1.11.1.6
[Ref.: #68373]	catalase	+	1.11.1.6	* from API CAM
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #22428]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #120556]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #68373]	gamma-glutamyltransferase	-	2.3.2.2	* from API CAM
[Ref.: #120556]	gelatinase	-
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68373]	L-aspartate arylamidase	-	3.4.11.21	* from API CAM
[Ref.: #68380]	leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120556]	oxidase	+
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A, API CAM
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #120556]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A, API CAM
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® CAM:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Reduction of nitrateNIT	EsteraseEST	Hippuric acidHIP	gamma-Glutamyl transferaseGGT	Reduction of Triphenyl tetrazolium chlorideTTC	Pyrrolidonyl arylamidasePYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	Alkaline phosphatasePAL	H2S productionH2S	Assimilation of D-glucoseGLU	Assimilation of succinateSUT	Growth inhibitionNAL	Growth inhibitionCFZ	Assimilation of acetateACE	Assimilation of propionic acidPROP	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Erythromycin resistance (+) sensitivity (-)ERO	CatalaseCAT
[Ref.: #22428]	3834	-	+	-	-	-	+	-	-	-	+	-	-	+/-	-	+/-	-	+/-	-	-	-	+
[Ref.: #56327]	1749	-	+	+	-	-	+	-	+	-	+	-	-	+	-	-	-	+	-	-	+	+
[Ref.: #22428]	3955	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	+

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #56327]	4723	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #56327]	1415	-	+	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-
[Ref.: #120556]	9807	-	+	+	+	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22428]	Sample type/isolated from	faecal sample of healthy, 21-year-old abattoir worker
[Ref.: #22428]	Country	Switzerland
[Ref.: #22428]	Country ISO 3 Code	CHE
[Ref.: #22428]	Continent	Europe

[Ref.: #56327]	Sample type/isolated from	Human,asymptomatic worker in an abattoir
[Ref.: #56327]	Country	Switzerland
[Ref.: #56327]	Country ISO 3 Code	CHE
[Ref.: #56327]	Continent	Europe

[Ref.: #120556]	Sample type/isolated from	Human, Asymptomatic worker in an abattoir
[Ref.: #120556]	Country	Switzerland
[Ref.: #120556]	Country ISO 3 Code	CHE
[Ref.: #120556]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF043424 (>99% sequence identity) for Campylobacter lanienae subclade from Microbeatlas

Aquatic Samples	3
Soil Samples	1
Animal Samples	689
Plant Samples	1
Total Samples	694

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #120556]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22428]	Campylobacter cf. lanienae UB 994 16S ribosomal RNA gene, partial sequence	AF043424	1474	ENA	98336 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Campylobacter lanienae NCTC 13004	GCA_002139935	complete	GenBank	1031753 tax ID	*
[Ref.: #66792]	Campylobacter lanienae NCTC 13004 strain NCTC 13004	1031753.3	complete	PATRIC	1031753 tax ID	*

[Ref.: #22428]

GC-content

36 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Campylobacter lanienae NCTC 13004 NCTC 13004 NCBI: GCA_002139935.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Campylobacter lanienae NCTC 13004 NCTC 13004 NCBI: GCA_002139935.1
[Ref.: #69480]	flagellated	yes	64.542	no
[Ref.: #69480]	gram-positive	no	98.781	no
[Ref.: #69480]	anaerobic	no	86.766	no
[Ref.: #69480]	halophile	no	90.722	no
[Ref.: #69480]	spore-forming	no	94.786	no
[Ref.: #69480]	glucose-util	no	92.273	yes
[Ref.: #69480]	aerobic	no	98.338	yes
[Ref.: #69480]	thermophile	no	85.934	no
[Ref.: #69480]	motile	yes	91.697	no
[Ref.: #69480]	glucose-ferment	no	87.017	no

Availability in culture collections External links

[Ref.: #22428]

Culture collection no.

DSM 101946, NCTC 13004, CCUG 44467, CIP 106785

[Ref.: #89590]

SI-ID 26326

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation of a Campylobacter lanienae-like bacterium from laboratory chinchillas (Chinchilla laniger).	Turowski EE, Shen Z, Ducore RM, Parry NM, Kirega A, Dewhirst FE, Fox JG	Zoonoses Public Health	10.1111/zph.12107	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22428

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101946

#39581 ; Curators of the CIP;
#56327 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 44467

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68373

Automatically annotated from API CAM .

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89590

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID26326.1 )

#120556 Collection of Institut Pasteur ; Curators of the CIP; CIP 106785
* These data were automatically processed and therefore are not curated

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Search for species Campylobacter lanienae in external resources:
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Campylobacter lanienae NCTC 13004 NCTC 13004

Campylobacter lanienae NCTC 13004 NCTC 13004

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Change proposal