Lacticaseibacillus paracasei (DSM 28675, 25)

Name: Lacticaseibacillus paracasei (DSM 28675, 25)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131132

Type strain

Strain Designation 25

Culture col. no. DSM 28675 25

NCBI tax ID(s) 1597

Special Collections DSMZ Mouse DZIF

Links

Lacticaseibacillus paracasei 25 is a microaerophile, mesophilic prokaryote that was isolated from caecal content; wildtype C57BL/6 mouse.

microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 405833

DSM 28675

@ref 20215

Last LPSN update 2025-12-16 10:01:10

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lacticaseibacillus

Species Lacticaseibacillus paracasei

Full scientific name Lacticaseibacillus paracasei (Collins et al. 1989) Zheng et al. 2020

Synonyms (1)

Lactobacillus paracasei

BacDive ID	Other strains from **Lacticaseibacillus paracasei** (1)	Type strain
162870	L. paracasei JCM 20315, IAM 10074

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		91.5
125438		91.911	positive

Colony morphology

22424

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22424	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22424	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
22424	microaerophile
125439	microaerophile	90.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	#Large intestine
#Host Body Product	#Gastrointestinal tract	#Caecal content

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22424	caecal content; wildtype C57BL/6 mouse	Freising	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence KR364779 (>99% sequence identity) for Lactobacillaceae from Microbeatlas

Aquatic Samples	2397
Soil Samples	1801
Animal Samples	39363
Plant Samples	883
Total Samples	44444

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
22424	yes, in single cases	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM2462251v1 assembly for Lacticaseibacillus paracasei DSM 28675	contig	GCA_024622515	1597.1082	1597	58.92

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22424	Lactobacillus sp. 25 16S ribosomal RNA gene, partial sequence	KR364779	1462		1796639

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lacticaseibacillus paracasei DSM 28675
NCBI: GCA_024622515

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	86.90	no
125439	motility	BacteriaNetⓘ	no	61.20	no
125439	gram_stain	BacteriaNetⓘ	positive	85.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	90.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lacticaseibacillus paracasei DSM 28675
NCBI: GCA_024622515.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.91	no
125438	anaerobic	anaerobicⓘ	no	87.75	no
125438	aerobic	aerobicⓘ	no	92.94	yes
125438	spore-forming	spore-formingⓘ	no	75.16	no
125438	thermophilic	thermophileⓘ	no	96.00	yes
125438	flagellated	motile2+ⓘ	no	91.50	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22424	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28675
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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