Name: Thermorudis peleae KI4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131131

Type strain:

Species: Thermorudis peleae

Strain Designation: KI4

Culture col. no.: DSM 27169, ATCC BAA-2536

Strain history: <- C. King, Louisiana State Univ., Baton Rouge, USA; KI4

NCBI tax ID(s): 1382356 (species)

SI-ID 406116

DSM 27169

Special Collections

DSMZ

Section

Thermorudis peleae KI4 is a bacterium that was isolated from geothermally heated biofilm on a steaming tumulus.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermomicrobiota*
	Class	*Thermomicrobia*
	Order	*Thermomicrobiales*
	Family	*Thermomicrobiaceae*
	Genus	*Thermorudis*
	Species	**Thermorudis peleae**
	Full Scientific Name (LPSN)	Thermorudis peleae King and King 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22423]

Culture medium

THERMOMICROBIUM ROSEUM MEDIUM (DSMZ Medium 592)

[Ref.: #22423]

Culture medium growth

[Ref.: #22423]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22423]

Culture medium composition

expand / minimize

[Ref.: #22423]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22423]

Culture medium growth

[Ref.: #22423]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22423]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22423]			growth	65 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22423]	Sample type/isolated from	geothermally heated biofilm on a steaming tumulus
[Ref.: #22423]	Geographic location (country and/or sea, region)	Hawaii, Kilauea Iki crater (19° 24' 51.1'' N 155° 14' 57.4'' W)
[Ref.: #22423]	Country	USA
[Ref.: #22423]	Country ISO 3 Code	USA
[Ref.: #22423]	Continent	North America
[Ref.: #22423]	Geographic location	19.4142°/-155.2490°
* marker position based on {}

Isolation sources categories

#Environmental	#Biofilm	-
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF193530 (>99% sequence identity) for Thermorudis from Microbeatlas

Aquatic Samples	208
Soil Samples	413
Animal Samples	541
Plant Samples	25
Total Samples	1187

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22423]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22423]	Thermorudis peleae strain KI4 from USA 16S ribosomal RNA gene, partial sequence	KF193530	1245	GenBank ENA	1382356 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermorudis peleae KI4	GCA_000744775	contig	GenBank ENA	1382356 tax ID	*

[Ref.: #22423]

GC-content

60.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermorudis peleae KI4 NCBI: GCA_000744775.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	56.621	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	83.344	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	67.369	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	52.249	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	60.381	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	58.13	no

Availability in culture collections External links

[Ref.: #22423]

Culture collection no.

DSM 27169, ATCC BAA-2536

[Ref.: #89585]

SI-ID 406116

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermorudis pharmacophila sp. nov., a novel member of the class Thermomicrobia isolated from geothermal soil, and emended descriptions of Thermomicrobium roseum, Thermomicrobium carboxidum, Thermorudis peleae and Sphaerobacter thermophilus.	Houghton KM, Morgan XC, Lagutin K, MacKenzie AD, Vyssotskii M, Mitchell KA, McDonald IR, Morgan HW, Power JF, Moreau JW, Hanssen E, Stott MB	Int J Syst Evol Microbiol	10.1099/ijsem.0.000598	2015	*
Phylogeny	Thermomicrobium carboxidum sp. nov., and Thermorudis peleae gen. nov., sp. nov., carbon monoxide-oxidizing bacteria isolated from geothermally heated biofilms.	King CE, King GM	Int J Syst Evol Microbiol	10.1099/ijs.0.060327-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22423

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27169

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89585

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406116.1 )

* These data were automatically processed and therefore are not curated

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