Name: Enterobacter cancerogenus M004
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131113

Type strain:

Species: Enterobacter cancerogenus

Strain Designation: M004

Culture col. no.: DSM 100876

Strain history: <- W.-S. Tan, Univ. Malaya; M004 <- W.-S. Tan, Univ. Malaya;

NCBI tax ID(s): 69218 (species)

SI-ID 406115

DSM 100876

Other strains from Enterobacter cancerogenus

E. cancerogenus A-1, DSM 17580, ATCC 33241, CCM ... (type strain)
E. cancerogenus CIP 104953, NCPPB 2178
E. cancerogenus A-201, CIP 104954, NCPPB 2177
E. cancerogenus 2126-81, CIP 103356, ATCC 35317, ...
E. cancerogenus CCUG 21195
E. cancerogenus CCUG 21196
E. cancerogenus CCUG 29891
E. cancerogenus CCUG 48556
E. cancerogenus JCM 3944
E. cancerogenus JCM 3945
E. cancerogenus JCM 3946
E. cancerogenus JCM 3947

Section

Enterobacter cancerogenus M004 is a mesophilic bacterium that was isolated from Sungai Tua Waterfall, between Selayang and Ulu Yam.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Enterobacter*
	Species	**Enterobacter cancerogenus**
	Full Scientific Name (LPSN)	Enterobacter cancerogenus (Urosevic 1966) Dickey and Zumoff 1988

	Synonym	Enterobacter taylorae
	Synonym	Erwinia cancerogena

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22405]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #22405]

Culture medium growth

[Ref.: #22405]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #22405]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #22405]

Culture medium growth

[Ref.: #22405]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #22405]			growth	30 °C

[Ref.: #22405]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68368]		hydrogen sulfide ChEBI	no	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #22405]	18170	+	-	-	-	+	-	-	-	-	-	-	+	+	+	-	+	+	+	+	+	+/-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #22405]	16808	+	-	-	-	+	-	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22405]	Sample type/isolated from	Sungai Tua Waterfall, between Selayang and Ulu Yam
[Ref.: #22405]	Geographic location (country and/or sea, region)	Selangor
[Ref.: #22405]	Country	Malaysia
[Ref.: #22405]	Country ISO 3 Code	MYS
[Ref.: #22405]	Continent	Asia
[Ref.: #22405]	Geographic location	3.3333°/101.7000°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22405]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Enterobacter cancerogenus M004	GCA_000773965	contig	GenBank	69218 tax ID	*
[Ref.: #66792]	Enterobacter cancerogenus M004	69218.3	wgs	PATRIC	69218 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Enterobacter cancerogenus M004 PATRIC: 69218.3
[Ref.: #69480]	gram-positive	no	98.034	no
[Ref.: #69480]	anaerobic	no	98.622	no
[Ref.: #69480]	halophile	no	89.345	no
[Ref.: #69480]	spore-forming	no	94.776	no
[Ref.: #69480]	glucose-util	yes	95.702	no
[Ref.: #69480]	flagellated	no	62.118	no
[Ref.: #69480]	thermophile	no	99.463	yes
[Ref.: #69480]	motile	yes	91.21	no
[Ref.: #69480]	aerobic	no	56.254	no
[Ref.: #69480]	glucose-ferment	yes	88.351	no

Availability in culture collections External links

[Ref.: #22405]

Culture collection no.

DSM 100876

[Ref.: #89572]

SI-ID 406115

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22405

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100876

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89572

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406115.1 )

* These data were automatically processed and therefore are not curated

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