Anaerotruncus colihominis (DSM 28734, JM4-15)

Name: Anaerotruncus colihominis (DSM 28734, JM4-15)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131106

Type strain

Strain Designation JM4-15

Culture col. no. DSM 28734 JM4-15

NCBI tax ID(s) 169435

Special Collections DSMZ Mouse DZIF

History DSMZ <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; JM4-15

Links

Anaerotruncus colihominis JM4-15 is an anaerobe bacterium that was isolated from colonic mucosa; wildtype C57BL/6 mouse.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398263

DSM 28734

@ref 20215

Last LPSN update 2026-05-29 08:37:32

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Oscillospiraceae

Genus Anaerotruncus

Species Anaerotruncus colihominis

Full scientific name Anaerotruncus colihominis Lawson et al. 2004

BacDive ID	Other strains from **Anaerotruncus colihominis** (4)	Type strain
17679	A. colihominis 277, DSM 17241, CCUG 45055, CIP 107754, WAL ... (type strain)
156776	A. colihominis CCUG 65088
157144	A. colihominis CCUG 69734
163983	A. colihominis JCM 31255

Morphology

Colony morphology

22398

Incubation period2-3 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22398	BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)		Medium recipe at MediaDive	Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water
22398	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22398	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
22398	anaerobe
125439	obligate anaerobe	91.902

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	#Large intestine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22398	colonic mucosa; wildtype C57BL/6 mouse	Freising	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence KR364734 (>99% sequence identity) for Anaerotruncus colihominis subclade from Microbeatlas

Aquatic Samples	361
Soil Samples	286
Animal Samples	52440
Plant Samples	148
Total Samples	53235

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22398	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2462319v1 assembly for Anaerotruncus colihominis DSM 28734	contig	GCA_024623195	169435.94	8075105701	169435	69.95
66792	ASM1020619v1 assembly for Anaerotruncus colihominis JM4-15	contig	GCA_010206195	169435.47	8002093769	169435	69.57

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22398	Anaerotruncus colihominis strain JM4-15 16S ribosomal RNA gene, partial sequence	KR364734	1414		169435

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2462319v1 assembly for Anaerotruncus colihominis DSM 28734
NCBI: GCA_024623195

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	91.90	no
125439	gram_stain	BacteriaNetⓘ	negative	48.22	no
125439	motility	BacteriaNetⓘ	yes	45.06	no
125439	spore_formation	BacteriaNetⓘ	no	68.13	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Anaerotruncus colihominis JM4-15
NCBI: GCA_010206195.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	66.65	no
125438	anaerobic	anaerobicⓘ	yes	80.85	yes
125438	aerobic	aerobicⓘ	no	89.81	yes
125438	spore-forming	spore-formingⓘ	no	51.00	no
125438	thermophilic	thermophileⓘ	no	86.77	yes
125438	flagellated	motile2+ⓘ	yes	61.17	no

Literature

Title	Authors	Journal	DOI	Year
Draft Genome Sequences of 15 Bacterial Species Constituting the Stable Defined Intestinal Microbiota of the GM15 Gnotobiotic Mouse Model.	Elie C, Mathieu A, Saliou A, Villain A, Darnaud M, Leulier F, Tamellini A.	Microbiol Resour Announc	10.1128/mra.00686-20	2020
A standardized gnotobiotic mouse model harboring a minimal 15-member mouse gut microbiota recapitulates SOPF/SPF phenotypes.	Darnaud M, De Vadder F, Bogeat P, Boucinha L, Bulteau AL, Bunescu A, Couturier C, Delgado A, Dugua H, Elie C, Mathieu A, Novotna T, Ouattara DA, Planel S, Saliou A, Srutkova D, Yansouni J, Stecher B, Schwarzer M, Leulier F, Tamellini A.	Nat Commun	10.1038/s41467-021-26963-9	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22398	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28734
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Anaerotruncus colihominis (DSM 28734, JM4-15)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_024623195

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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