Enterobacter hormaechei subsp. steigerwaltii EN-562 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from infected surgical skin wound of a 49-year-old patient with tonsillar carcinoma.
Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Enterobacter |
| Species Enterobacter hormaechei subsp. steigerwaltii |
| Full scientific name Enterobacter hormaechei subsp. steigerwaltii Hoffmann et al. 2016 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 22396 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 22396 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | Medium recipe at MediaDive | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water | ||
| 41957 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 22396 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 119968 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 93 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | + | fermentation | from API 20E |
| 68368 | 29016 ChEBI | arginine | + | hydrolysis | from API 20E |
| 119968 | 16947 ChEBI | citrate | + | carbon source | |
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 119968 | 17234 ChEBI | glucose | + | fermentation | |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 119968 | 17716 ChEBI | lactose | - | fermentation | |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 119968 | 15792 ChEBI | malonate | + | assimilation | |
| 119968 | 29864 ChEBI | mannitol | + | fermentation | |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68368 | 17268 ChEBI | myo-inositol | + | fermentation | from API 20E |
| 119968 | 17632 ChEBI | nitrate | + | reduction | |
| 119968 | 16301 ChEBI | nitrite | - | reduction | |
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 119968 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68368 | 30911 ChEBI | sorbitol | + | fermentation | from API 20E |
| 68368 | 17992 ChEBI | sucrose | + | fermentation | from API 20E |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 119968 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 119968 | alcohol dehydrogenase | + | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | + | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 119968 | beta-galactosidase | + | 3.2.1.23 | |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 119968 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 119968 | gelatinase | - | ||
| 68368 | gelatinase | - | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 119968 | lysine decarboxylase | - | 4.1.1.18 | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 119968 | ornithine decarboxylase | + | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 119968 | oxidase | - | ||
| 119968 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 119968 | tryptophan deaminase | - | ||
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 119968 | urease | - | 3.5.1.5 | |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22396 | + | + | - | + | + | - | - | - | - | - | - | + | + | + | + | + | + | + | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Infection | #Disease | - | |
| #Infection | #Patient | - | |
| #Host Body-Site | #Other | #Wound | |
| #Host Body-Site | #Organ | #Skin, Nail, Hair |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Latitude | Longitude | Sampling date | Isolation date | |
|---|---|---|---|---|---|---|---|---|---|---|
| 22396 | infected surgical skin wound of a 49-year-old patient with tonsillar carcinoma | Brussels | Belgium | BEL | Europe | 50.8506 | 4.3489 50.8506/4.3489 | |||
| 60072 | Human surgical wound | Brussels | Belgium | BEL | Europe | 2002 | ||||
| 119968 | Surgical wound infection | Brussels | Belgium | BEL | Europe | 2002 |
Global distribution of 16S sequence AJ853890 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM172972v1 assembly for Enterobacter hormaechei subsp. steigerwaltii DSM 16691 | complete | 299766 | 99.22 | ||||
| 66792 | ASM1904794v1 assembly for Enterobacter hormaechei FDAARGOS 1434 | complete | 158836 | 99.21 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 22396 | Enterobacter hormaechei subsp. steigerwaltii 16S rRNA gene, type strain EN-562T | AJ853890 | 1514 | 299766 | ||
| 124043 | Enterobacter hormaechei subsp. steigerwaltii strain DSM 16691 16S ribosomal RNA gene, partial sequence. | MT782293 | 1330 | 299766 | ||
| 124043 | Enterobacter hormaechei subsp. steigerwaltii strain DSM 16691 16S ribosomal RNA gene, partial sequence. | MT782286 | 1331 | 299766 | ||
| 124043 | Enterobacter hormaechei subsp. steigerwaltii strain DSM 16691 16S ribosomal RNA gene, partial sequence. | MT781399 | 1303 | 299766 | ||
| 124043 | Enterobacter hormaechei subsp. steigerwaltii strain DSM 16691 16S ribosomal RNA gene, partial sequence. | MT782329 | 1341 | 299766 | ||
| 124043 | Enterobacter hormaechei subsp. steigerwaltii strain DSM 16691 16S ribosomal RNA gene, partial sequence. | MT782896 | 1331 | 299766 | ||
| 124043 | Enterobacter hormaechei subsp. steigerwaltii strain DSM 16691 16S ribosomal RNA gene, partial sequence. | MT782289 | 1331 | 299766 | ||
| 124043 | Enterobacter hormaechei subsp. steigerwaltii strain DSM 16691(T) 16S ribosomal RNA gene, partial sequence. | MW111213 | 599 | 299766 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 93.00 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 63.10 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 96.50 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 78.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 94.53 | no |
| 125438 | aerobic | aerobicⓘ | no | 57.36 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 87.64 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.50 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 80.63 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genomic characterization of bla OXA-48 -carrying IncL plasmids in Enterobacterales in Vietnam. | Dieu Tran L, Thai Pham D, Duong Tran N, Anh Dang D, Anh Tran H, van Doorn HR, Shibayama K, Huy Tran H, Suzuki M. | MicroPubl Biol | 10.17912/micropub.biology.001603 | 2025 | ||
| Draft genome sequence of Enterobacter hormaechei DVZ29, an iodide-oxidizing bacterium isolated from the Hanford site. | Robinson CJ, Smith RL, Howard MH, Saunders DL, Lee BD. | Microbiol Resour Announc | 10.1128/mra.00525-23 | 2023 | ||
| Presence and Role of the Type 3 Fimbria in the Adherence Capacity of Enterobacter hormaechei subsp. hoffmannii. | Fernandez-Yanez V, Ibaceta V, Torres A, Vidal RM, Schneider I, Schilling V, Toro C, Arellano C, Scavone P, Munoz I, Del Canto F. | Microorganisms | 10.3390/microorganisms12071441 | 2024 | ||
| Genetics | Whole-Genome Sequence and Fermentation Characteristics of Enterobacter hormaechei UW0SKVC1: A Promising Candidate for Detoxification of Lignocellulosic Biomass Hydrolysates and Production of Value-Added Chemicals. | Kumar S, Agyeman-Duah E, Ujor VC. | Bioengineering (Basel) | 10.3390/bioengineering10091090 | 2023 | |
| Whole genome sequence-based molecular characterization of blood isolates of carbapenem-resistant Enterobacter cloacae complex from ICU patients in Kolkata, India, during 2017-2022: emergence of phylogenetically heterogeneous Enterobacter hormaechei subsp. xiangfangensis. | Halder G, Chaudhury BN, Mandal S, Denny P, Sarkar D, Chakraborty M, Khan UR, Sarkar S, Biswas B, Chakraborty A, Maiti S, Dutta S. | Microbiol Spectr | 10.1128/spectrum.03529-23 | 2024 | ||
| Draft Genome Sequence of Enterobacter hormaechei subsp. steigerwaltii Strain BEI01. | Wee SK, Chan SCM, Guan XL, Yap EPH. | Microbiol Resour Announc | 10.1128/mra.00406-21 | 2021 | ||
| Colistin Resistance Mechanism in Enterobacter hormaechei subsp. steigerwaltii Isolated from Wild Boar (Sus scrofa) in France. | Laidoudi Y, Ngaiganam EP, Marie JL, Pagnier I, Rolain JM, Mouhamadou Diene S, Davoust B. | Pathogens | 10.3390/pathogens11091022 | 2022 | ||
| Genetics | Genome sequence-based species classification of Enterobacter cloacae complex: a study among clinical isolates. | Qiu X, Ye K, Ma Y, Zhao Q, Wang L, Yang J. | Microbiol Spectr | 10.1128/spectrum.04312-23 | 2024 | |
| First Case Report of Detection of Multidrug-Resistant Enterobacter hormaechei in Clinical Sample from an Aborted Ruminant. | Zaitsev SS, Khizhnyakova MA, Feodorova VA. | Microorganisms | 10.3390/microorganisms10051036 | 2022 | ||
| Phenotypic and Genotypic Characterization of Multidrug-Resistant Enterobacter hormaechei Carrying qnrS Gene Isolated from Chicken Feed in China. | Cao Z, Cui L, Liu Q, Liu F, Zhao Y, Guo K, Hu T, Zhang F, Sheng X, Wang X, Peng Z, Dai M. | Microbiol Spectr | 10.1128/spectrum.02518-21 | 2022 | ||
| Emergence of concurrently transmissible mcr-9 and carbapenemase genes in bloodborne colistin-resistant Enterobacter cloacae complex isolated from ICU patients in Kolkata, India. | Halder G, Chaudhury BN, Denny P, Chakraborty M, Mandal S, Dutta S. | Microbiol Spectr | 10.1128/spectrum.01542-24 | 2025 | ||
| Enterobacter Strain IPPBiotE33 Displays a Synergistic Effect with Bacillus thuringiensis Bt185. | Mi L, Gu Z, Li Y, Xu W, Shu C, Zhang J, Bai X, Geng L. | Int J Mol Sci | 10.3390/ijms241814193 | 2023 | ||
| Development of a One-Step Multiplex PCR Assay for Differential Detection of Four species (Enterobacter cloacae, Enterobacter hormaechei, Enterobacter roggenkampii, and Enterobacter kobei) Belonging to Enterobacter cloacae Complex With Clinical Significance. | Ji Y, Wang P, Xu T, Zhou Y, Chen R, Zhu H, Zhou K. | Front Cell Infect Microbiol | 10.3389/fcimb.2021.677089 | 2021 | ||
| Genetics | High genetic diversity and different type VI secretion systems in Enterobacter species revealed by comparative genomics analysis. | Peng M, Lin W, Zhou A, Jiang Z, Zhou F, Wang Z. | BMC Microbiol | 10.1186/s12866-023-03164-6 | 2024 | |
| Coproduction Of MCR-9 And NDM-1 By Colistin-Resistant Enterobacter hormaechei Isolated From Bloodstream Infection. | Yuan Y, Li Y, Wang G, Li C, Xiang L, She J, Yang Y, Zhong F, Zhang L. | Infect Drug Resist | 10.2147/idr.s217168 | 2019 | ||
| Phylogeny | Phenotypic and Genotypic Identification of Bacteria Isolated From Traditionally Prepared Dry Starters of the Eastern Himalayas. | Pradhan P, Tamang JP. | Front Microbiol | 10.3389/fmicb.2019.02526 | 2019 | |
| Whole genome sequencing of Enterobacter mori, an emerging pathogen of kiwifruit and the potential genetic adaptation to pathogenic lifestyle. | Zhang M, Zhang Y, Han X, Wang J, Yang Y, Ren B, Xia M, Li G, Fang R, He H, Jia Y. | AMB Express | 10.1186/s13568-021-01290-w | 2021 | ||
| Metabolism | A Genomic Perspective on the Potential of Wild-Type Rumen Bacterium Enterobacter sp. LU1 as an Industrial Platform for Bio-Based Succinate Production. | Szczerba H, Dudziak K, Krawczyk M, Targonski Z. | Int J Mol Sci | 10.3390/ijms21144835 | 2020 | |
| Genetics | CABGen: A Web Application for the Bioinformatic Analysis of Bacterial Genomes. | Dure FM, Silveira MC, Rocha-de-Souza CM, Leao RS, de Oliveira Santos IC, Albano RM, Marques EA, D'Alincourt Carvalho-Assef AP, da Silva FAB. | Front Microbiol | 10.3389/fmicb.2022.893474 | 2022 | |
| Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center. | Ellington MJ, Heinz E, Wailan AM, Dorman MJ, de Goffau M, Cain AK, Henson SP, Gleadall N, Boinett CJ, Dougan G, Brown NM, Woodford N, Parkhill J, Torok ME, Peacock SJ, Thomson NR. | Genome Biol | 10.1186/s13059-019-1785-1 | 2019 | ||
| Precise Species Identification for Enterobacter: a Genome Sequence-Based Study with Reporting of Two Novel Species, Enterobacter quasiroggenkampii sp. nov. and Enterobacter quasimori sp. nov. | Wu W, Feng Y, Zong Z. | mSystems | 10.1128/msystems.00527-20 | 2020 | ||
| Phylogeny | Enterobacterhormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is a later heterotypic synonym of Enterobacter asburiae based on computational analysis of sequenced Enterobacter genomes. | Sutton GG, Brinkac LM, Clarke TH, Fouts DE. | F1000Res | 10.12688/f1000research.14566.2 | 2018 | |
| Genetics | Superficieibacter electus gen. nov., sp. nov., an Extended-Spectrum beta-Lactamase Possessing Member of the Enterobacteriaceae Family, Isolated From Intensive Care Unit Surfaces. | Potter RF, D'Souza AW, Wallace MA, Shupe A, Patel S, Gul D, Kwon JH, Beatty W, Andleeb S, Burnham CD, Dantas G. | Front Microbiol | 10.3389/fmicb.2018.01629 | 2018 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #22396 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16691 |
| #41957 | ; Curators of the CIP; |
| #60072 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53904 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68368 | Automatically annotated from API 20E . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #119968 | Collection of Institut Pasteur ; Curators of the CIP; CIP 108489 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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