Name: Pandoraea pnomenusa B356
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131102

Type strain:

Species: Pandoraea pnomenusa

Strain Designation: B356

Culture col. no.: DSM 101008

Strain history: <- M. Sylvestre, Institut Armand-Frappier INRS, Laval, Canada; B356

NCBI tax ID(s): 93220 (species)

SI-ID 406796

DSM 101008

Other strains from Pandoraea pnomenusa

P. pnomenusa R140, DSM 16536, CCM 4978, CCUG ... (type strain)
P. pnomenusa CCUG 39672
P. pnomenusa CCUG 39683, LMG 18820
P. pnomenusa CCUG 39689, LMG 18817
P. pnomenusa CCUG 39694
P. pnomenusa CCUG 42779
P. pnomenusa CCUG 45204
P. pnomenusa CCUG 45402
P. pnomenusa CCUG 48224
P. pnomenusa CCUG 53975
P. pnomenusa CCUG 69688
P. pnomenusa DSM 100868, RB 38

Section

Pandoraea pnomenusa B356 is a mesophilic bacterium that was isolated from activated sludge from water treatment system.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Burkholderiaceae*
	Genus	*Pandoraea*
	Species	**Pandoraea pnomenusa**
	Full Scientific Name (LPSN)	Pandoraea pnomenusa Coenye et al. 2000

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22394]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #22394]

Culture medium growth

[Ref.: #22394]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22394]

Culture medium composition

expand / minimize

[Ref.: #22394]

Culture medium

MINERAL MEDIUM WITH VITAMINS (DSMZ Medium 462)

[Ref.: #22394]

Culture medium growth

[Ref.: #22394]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22394]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22394]			growth	28 °C

[Ref.: #22394]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #22394]	23533	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22394]	Sample type/isolated from	activated sludge from water treatment system
[Ref.: #22394]	Geographic location (country and/or sea, region)	Montreal
[Ref.: #22394]	Country	Canada
[Ref.: #22394]	Country ISO 3 Code	CAN
[Ref.: #22394]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF596910 (>99% sequence identity) for Pandoraea from Microbeatlas

Aquatic Samples	4192
Soil Samples	6943
Animal Samples	3605
Plant Samples	5843
Total Samples	20583

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22394]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22394]	Pandoraea pnomenusa strain B-356 16S ribosomal RNA gene, partial sequence	EF596910	1434	ENA	93220 tax ID

Availability in culture collections External links

[Ref.: #22394]

Culture collection no.

DSM 101008

[Ref.: #89561]

SI-ID 406796

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22394

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101008

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89561

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406796.1 )

* These data were automatically processed and therefore are not curated

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