Pseudomonas gessardii (CCUG 43164, DSM 17152, CCM 4986)

Name: Pseudomonas gessardii (CCUG 43164, DSM 17152, CCM 4986)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13110

Type strain

Culture col. no. CCUG 43164 DSM 17152 CCM 4986 CFML 95-251 CIP 105469

NCBI tax ID(s) 78544

Special Collections DSMZ CCUG CIP

History DSMZ <- CCM <- CCUG <- CIP <- D. Izard CIP <- 1998, D. Izard, Fac. Med. Henri Warembourg, Lille, France: strain CFML 95-251

Links

Pseudomonas gessardii CCUG 43164 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from mineral water.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 69801

LMG 21604,CIP 105469,CCUG 43164,DSM 17152,CCM 4986,KACC 10807,NCIMB 13835,CFBP 4840

@ref 20215

Last LPSN update 2026-05-29 08:27:58

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas gessardii

Full scientific name Pseudomonas gessardii Verhille et al. 1999

BacDive ID	Other strains from **Pseudomonas gessardii** (1)	Type strain
172859	P. gessardii 12, CRBIP25.3, LMG 1244

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119610	negative	rod-shaped
125439	negative		97.393
125438			90.904
125438	negative		99

Pigmentation

@ref	Production	Name
119610		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6793	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
42005	MEDIUM 29- Brain heart agar		Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
119610	CIP Medium 29	Medium recipe at CIP
119610	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6793	positive	growth	30
42005	positive	growth	30
55703	positive	growth	30
119610	positive	growth	5-30
119610	negative	growth	37
119610	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
55703	aerobe
119610	obligate aerobe
125438	aerobe	90.874

Spore formation

@ref	Spore formation	Confidence
125439		99.899

Halophily

@ref	Salt	Growth	Tested relation	Concentration
119610	NaCl	positive	growth	0-6 %
119610	NaCl		growth	8 %
119610	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	+	hydrolysis	from API 20NE
119610	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
119610	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
119610	17632 ChEBI	nitrate	+	reduction
119610	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
119610	16301 ChEBI	nitrite	+	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119610	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
119610	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119610	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119610	amylase	-
68369	arginine dihydrolase	+	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
119610	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119610	caseinase	+	3.4.21.50
119610	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
119610	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119610	gelatinase	+/-
68369	gelatinase	+		from API 20NE
119610	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
119610	lipase	-
68382	lipase (C 14)	-		from API zym
119610	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119610	ornithine decarboxylase	-	4.1.1.17
119610	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
119610	tryptophan deaminase	-
119610	tween esterase	-
119610	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	+		from API zym

Fatty acid profile

Metadata FA analysis

@ref

55703

Fatty acid	Percentage	ECL
C16:1 ω7c	26.5	15.819
C16:0	25.5	16
C17:0 CYCLO	13	16.888
C12:0 2OH	6.5	13.178
C18:1 ω7c /12t/9t	5.9	17.824
C12:0 3OH	4.4	13.455
Unidentified	3	16.297
C12:0	2.8	12
C10:0 3OH	2.8	11.423
C15:0 ISO 3OH	2.2	16.135
C15:0	1.6	15
Unidentified	1.4	10.662
C14:0	1	14
Unidentified	0.8	17.2
C17:0	0.7	17
Unidentified	0.7	12.268
C18:2 ω6,9c/C18:0 ANTE	0.4	17.724
C18:0	0.3	18
Unidentified	0.3	10.469

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119610	-	-	+	+	-	+	+	-	-	-	+	+	-	-	-	-	+	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
6793	+	-	-	+	-	-	+	-	+	-	+	+	+	-	+	+	+	+	+	-	+
6793	+	-	-	+	-	-	+	-	+	-	+	+	+	-	+	+	+	+	+	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119610	not determinedn.d.	+	+	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	+	+	-	-	+	+	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	+	-	+	+	+	-	-	-	+	+	+	+	-	-	-	+	+	+	-	+	+	+	+	+	+	+	-	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent	Isolation date
6793	mineral water		France	FRA	Europe
55703	Mineral waters	1995	France	FRA	Europe
119610	Environment, Mineral waters					1995

Taxonmaps

69479

Global distribution of 16S sequence AF074384 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	1631
Soil Samples	874
Animal Samples	3216
Plant Samples	2451
Total Samples	8172

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6793	1	Risk group (German classification) According to TRBA 466
119610	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM198316v1 assembly for Pseudomonas gessardii DSM 17152	contig	GCA_001983165	78544.5	2917203564	78544	49.76
66792	ASM967128v1 assembly for Pseudomonas gessardii DSM 17152	contig	GCA_009671285	78544.11		78544	46.18

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
6793	Pseudomonas gessardii 16S ribosomal RNA gene, complete sequence	AF074384	1516	78544
124043	Pseudomonas gessardii strain BD11-00182 16S ribosomal RNA gene, partial sequence.	KU647670	1449	78544
124043	Pseudomonas gessardii strain CIP 105469 16S ribosomal RNA gene, partial sequence.	MZ146720	1347	78544
124043	Pseudomonas gessardii strain CIP 105469 16S ribosomal RNA gene, partial sequence.	OP164734	1441	78544

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM198316v1 assembly for Pseudomonas gessardii DSM 17152
NCBI: GCA_001983165

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	97.39	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	77.04	no
125439	motility	BacteriaNetⓘ	yes	83.38	no
125439	spore_formation	BacteriaNetⓘ	no	99.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas gessardii strain DSM 17152
PATRIC: 78544.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	98.84	yes
125438	aerobic	aerobicⓘ	yes	90.87	yes
125438	spore-forming	spore-formingⓘ	no	88.36	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	90.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Characterization of a New Mixture of Mono-Rhamnolipids Produced by Pseudomonas gessardii Isolated from Edmonson Point (Antarctica).	Buonocore C, Tedesco P, Vitale GA, Esposito FP, Giugliano R, Monti MC, D'Auria MV, de Pascale D.	Mar Drugs	10.3390/md18050269	2020
Pathogenicity	Fast and Easy Phage-Tagging and Live/Dead Analysis for the Rapid Monitoring of Bacteriophage Infection.	Low HZ, Bohnlein C, Sprotte S, Wagner N, Fiedler G, Kabisch J, Franz CMAP.	Front Microbiol	10.3389/fmicb.2020.602444	2020
	Bacterial Microbiota of Rice Roots: 16S-Based Taxonomic Profiling of Endophytic and Rhizospheric Diversity, Endophytes Isolation and Simplified Endophytic Community.	Moronta-Barrios F, Gionechetti F, Pallavicini A, Marys E, Venturi V.	Microorganisms	10.3390/microorganisms6010014	2018
	Phosphate and potash solubilizing bacteria from Moroccan phosphate mine showing antagonism to bacterial canker agent and inducing effective tomato growth promotion.	Bouizgarne B, Bakki M, Boutasknit A, Banane B, El Ouarrat H, Ait El Maalem S, Amenzou A, Ghousmi A, Meddich A.	Front Plant Sci	10.3389/fpls.2023.970382	2023
	Psychrophilic Lipase from Arctic Bacterium.	Ramle Z, Rahim RA.	Trop Life Sci Res	10.21315/tlsr2016.27.3.21	2016
	Pseudomonads Rule Degradation of Polyaromatic Hydrocarbons in Aerated Sediment.	Wald J, Hroudova M, Jansa J, Vrchotova B, Macek T, Uhlik O.	Front Microbiol	10.3389/fmicb.2015.01268	2015
	Plasmid donor affects host range of promiscuous IncP-1beta plasmid pB10 in an activated-sludge microbial community.	De Gelder L, Vandecasteele FP, Brown CJ, Forney LJ, Top EM.	Appl Environ Microbiol	10.1128/aem.71.9.5309-5317.2005	2005
	Characterization of bacteria in ballast water using MALDI-TOF mass spectrometry.	Emami K, Askari V, Ullrich M, Mohinudeen K, Anil AC, Khandeparker L, Burgess JG, Mesbahi E.	PLoS One	10.1371/journal.pone.0038515	2012
Phylogeny	Possible misidentification of species in the Pseudomonas fluorescens lineage as Burkholderia pseudomallei and Francisella tularensis, and emended descriptions of Pseudomonas brenneri,Pseudomonas gessardii and Pseudomonas proteolytica.	van den Beld MJC, Reinders E, Notermans DW, Reubsaet FAG	Int J Syst Evol Microbiol	10.1099/ijsem.0.001206	2016
Phylogeny	Isolation, identification and characterization of a new lipolytic pseudomonas sp., strain AHD-1, from Tunisian soil.	Fendri I, Chaari A, Dhouib A, Jlassi B, Abousalham A, Carriere F, Sayadi S, Abdelkafi S	Environ Technol	10.1080/09593330903369994	2010
Phylogeny	Pseudomonas lactucae sp. nov., a pathogen causing bacterial rot of lettuce in Japan.	Sawada H, Fujikawa T, Satou M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004917	2021
Phylogeny	Pseudomonas lactis sp. nov. and Pseudomonas paralactis sp. nov., isolated from bovine raw milk.	von Neubeck M, Huptas C, Gluck C, Krewinkel M, Stoeckel M, Stressler T, Fischer L, Hinrichs J, Scherer S, Wenning M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001836	2017
Phylogeny	Pseudomonas grimontii sp. nov.	Baida N, Yazourh A, Singer E, Izard D	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1497	2002
Phylogeny	Pseudomonas gessardii sp. nov. and Pseudomonas migulae sp. nov., two new species isolated from natural mineral waters.	Verhille S, Baida N, Dabboussi F, Hamze M, Izard D, Leclerc H	Int J Syst Bacteriol	10.1099/00207713-49-4-1559	1999

References

#6793	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17152
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42005	; Curators of the CIP;
#55703	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 43164
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119610	Collection of Institut Pasteur ; Curators of the CIP; CIP 105469
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas gessardii (CCUG 43164, DSM 17152, CCM 4986)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

API zym

API 20NE

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001983165

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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