Staphylococcus warneri (DSM 28567, JM-8)

Name: Staphylococcus warneri (DSM 28567, JM-8)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131020

Type strain

Strain Designation JM-8

Culture col. no. DSM 28567 JM-8

NCBI tax ID(s) 1292

Special Collections DSMZ Mouse DZIF

History <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; JM-8

Links

Staphylococcus warneri JM-8 is a bacterium that was isolated from colonic mucosa; TNF^deltaARE/+ C57BL/6 mouse.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401946

DSM 28567

@ref 20215

Last LPSN update 2026-02-09 11:31:22

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Species Staphylococcus warneri

Full scientific name Staphylococcus warneri Kloos and Schleifer 1975 (Approved Lists 1980)

BacDive ID	Other strains from **Staphylococcus warneri** (69)	Type strain
14587	S. warneri AW 25, DSM 20316, ATCC 27836, CCM 2730, CCUG ... (type strain)
14586	S. warneri 0258, DSM 20036, ATCC 155, JCM 20142, IAM ...
14588	S. warneri FR1-12, DSM 30728
14589	S. warneri KO_PS54, DSM 30845
14590	S. warneri E2, DSM 30856
14591	S. warneri E5, DSM 30859
14592	S. warneri E14B, DSM 30869
14593	S. warneri E15, DSM 30870
14594	S. warneri E18, DSM 30873
14595	S. warneri E19, DSM 30874
14596	S. warneri E26, DSM 30881
14597	S. warneri E27, DSM 30882
130695	S. warneri G4, DSM 31023
130696	S. warneri G26, DSM 31029
130697	S. warneri T2_18, DSM 30985
130698	S. warneri T2_27, DSM 30992
131021	S. warneri SP2-2, DSM 100607
131022	S. warneri S11-1-1, DSM 100615
131023	S. warneri S11-1-2, DSM 100616
135347	S. warneri CIP 103960, ATCC 17917
137723	S. warneri SP-2, CIP 106511, ATCC 35982, CCUG 44859
141647	S. warneri CCUG 4320, NCTC 7291
144268	S. warneri CCUG 24099
146040	S. warneri CCUG 30243
146041	S. warneri CCUG 30244
146042	S. warneri CCUG 30245
146043	S. warneri CCUG 30246
146044	S. warneri CCUG 30247, ATCC 49454
146045	S. warneri CCUG 30248
146046	S. warneri CCUG 30249
146280	S. warneri CCUG 30782, FSC 059
146481	S. warneri CCUG 31265
146926	S. warneri CCUG 32459
146981	S. warneri CCUG 32591
146982	S. warneri CCUG 32592
147272	S. warneri CCUG 33241
147457	S. warneri CCUG 33608
148890	S. warneri CCUG 36552
148996	S. warneri CCUG 36695
149079	S. warneri CCUG 36829
149363	S. warneri CCUG 37589 B
150189	S. warneri CCUG 39229
150430	S. warneri CCUG 39906
150514	S. warneri CCUG 41469
150872	S. warneri CCUG 42602
151436	S. warneri CCUG 44080
151447	S. warneri CCUG 44091
151895	S. warneri CCUG 45143
154017	S. warneri CCUG 51994
155522	S. warneri CCUG 57975
157882	S. warneri T5b-T10, DSM 105506
157883	S. warneri T5b-T11, DSM 105507
157884	S. warneri T7b-T24, DSM 105511
157885	S. warneri TURIN130318_T3, DSM 107243
157886	S. warneri Stevenage150518_C12, DSM 107794
157887	S. warneri TURIN241018_T1, DSM 108815
157888	S. warneri TURIN241018-T2, DSM 108816
159070	S. warneri CA-T1, DSM 110956
159071	S. warneri CA-T3, DSM 110957
159072	S. warneri CA-T4, DSM 110958
160183	S. warneri SK25, DSM 24886
160184	S. warneri SB 323, DSM 111872
161120	S. warneri JCM 11004, MTCC 6158
161121	S. warneri JCM 11005
174296	S. warneri BM9804, CRBIP21.5
174297	S. warneri BM9408, CRBIP21.51
174298	S. warneri BM9414, CRBIP21.52
174299	S. warneri BM9372, CRBIP21.56
174300	S. warneri BM9418, CRBIP21.57

Morphology

Colony morphology

22312

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22312	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22312	positive	growth	37

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68375	22599 ChEBI	arabinose	-	fermentation	from API ID32STA
68375	29016 ChEBI	arginine	+	hydrolysis	from API ID32STA
68375	17057 ChEBI	cellobiose	-	fermentation	from API ID32STA
68375	15824 ChEBI	D-fructose	+	fermentation	from API ID32STA
68375	17634 ChEBI	D-glucose	+	fermentation	from API ID32STA
68375	16024 ChEBI	D-mannose	-	fermentation	from API ID32STA
68375	16988 ChEBI	D-ribose	-	fermentation	from API ID32STA
68375	4853 ChEBI	esculin	-	hydrolysis	from API ID32STA
68375	59640 ChEBI	N-acetylglucosamine	-	fermentation	from API ID32STA
68375	17632 ChEBI	nitrate	+	reduction	from API ID32STA
68375	18257 ChEBI	ornithine	-	degradation	from API ID32STA
68375	16634 ChEBI	raffinose	-	fermentation	from API ID32STA
68375	17992 ChEBI	sucrose	+	fermentation	from API ID32STA
68375	32528 ChEBI	turanose	-	fermentation	from API ID32STA
68375	16199 ChEBI	urea	+	hydrolysis	from API ID32STA

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68375	15688 ChEBI	acetoin		from API ID32STA

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68375	15688 ChEBI	acetoin	+	from API ID32STA

Enzymes

@ref	Value	Activity	Ec
68375	alkaline phosphatase	-	3.1.3.1	from API ID32STA
68375	arginine dihydrolase	+	3.5.3.6	from API ID32STA
68375	beta-glucosidase	-	3.2.1.21	from API ID32STA
68375	beta-glucuronidase	+	3.2.1.31	from API ID32STA
68375	L-arginine arylamidase	-		from API ID32STA
68375	ornithine decarboxylase	-	4.1.1.17	from API ID32STA
68375	pyrrolidonyl arylamidase	-	3.4.19.3	from API ID32STA
68375	urease	+	3.5.1.5	from API ID32STA

API ID32STA

@ref	URE	ADH (Arg)	ODC	ESC	GLU	FRU	MNE	MAL	LAC	TRE	MAN	RAF	RIB	CEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta GAL	L-arginine arylamidaseArgA	PAL	Pyrrolidonyl arylamidasePyrA	NOVO	SAC	NAG	TUR	ARA	beta GUR
22312	+	+	-	-	+	+	-	+/-	-	-	+/-	-	-	-	+	+	-	-	-	-	-	+	-	-	-	+
22312	+	+	-	-	+	+	-	+	+	+	+	-	-	-	+	+	+	-	-	-	+	+	-	-	-	+
22312	+	+	-	-	+	+	-	+	+	+	+	-	-	-	+	+	+	-	-	-	+	+	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	#Large intestine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22312	colonic mucosa; TNF^deltaARE/+ C57BL/6 mouse	Freising	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
22312	yes, in single cases	yes, in single cases	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM2462192v1 assembly for Staphylococcus warneri DSM 28567	contig	GCA_024621925	1292.278	1292	67.58

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22312	Staphylococcus warneri strain JM8 16S ribosomal RNA gene, partial sequence	KR364790	1402		1292

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Staphylococcus warneri DSM 28567
NCBI: GCA_024621925.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	82.29	no
125438	anaerobic	anaerobicⓘ	no	99.92	no
125438	aerobic	aerobicⓘ	yes	60.57	no
125438	spore-forming	spore-formingⓘ	no	70.78	no
125438	thermophilic	thermophileⓘ	no	97.69	no
125438	flagellated	motile2+ⓘ	no	82.05	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22312	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28567
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68375	Automatically annotated from API ID32STA .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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