Acidobacterium capsulatum (DSM 11244, ATCC 51196, JCM 7670)

Name: Acidobacterium capsulatum (DSM 11244, ATCC 51196, JCM 7670)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131

Type strain

Strain Designation 161

Culture col. no. DSM 11244 ATCC 51196 JCM 7670 NCIMB 13165 161 3 more

NCBI tax ID(s) 240015 33075

Special Collections DSMZ JCM Literature strains

History DSMZ <- JCM <- N. Kishimoto, strain 161 JCM <-- N. Kishimoto 161.

Links

Acidobacterium capsulatum 161 is a rod-shaped bacterium that has a orange pigmentation and was isolated from acidic mineral environment.

rod-shaped pigmented genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 42853

ATCC 51196,NCIMB 13165,JCM 7670,DSM 11244,IFO 15755,NBRC 15755

@ref 20215

Last LPSN update 2026-05-29 08:24:57

Domain Bacteria

Phylum Acidobacteriota

Class Terriglobia

Order Terriglobales

Family Acidobacteriaceae

Genus Acidobacterium

Species Acidobacterium capsulatum

Full scientific name Acidobacterium capsulatum Kishimoto et al. 1991

Morphology

Cell morphology

@ref	Cell length	Cell shape	Gram stain	Confidence
22887	1.1-2.3 µm	rod-shaped
125439			negative	94.443
125438			negative	90

Colony morphology

4255

Incubation period3-7 days

Pigmentation

@ref	Production	Color
22887		orange

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4255	ACIDIPHILIUM MEDIUM (DSMZ Medium 269)		Medium recipe at MediaDive	Name: ACIDIPHILIUM MEDIUM (DSMZ Medium 269; with strain-specific modifications) Composition: (NH4)2SO4 2.0 g/l D-Glucose 1.0 g/l MgSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l Yeast extract 0.1 g/l KCl 0.1 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4255	positive	growth	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
22887	positive	maximum	6
22887	positive	minimum	3	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.211

Spore formation

@ref	Spore formation	Confidence
125439		95.565

Observation

67770

Observationquinones: MK-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	+	3.2.1.31	from API zym
4255	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
4255	cytochrome-c oxidase	-	1.9.3.1
68382	esterase lipase (C 8)	-		from API zym
68369	gelatinase	-		from API 20NE
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	methylglyoxal degradation	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	starch degradation	100	10 of 10
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	glycogen metabolism	100	5 of 5
66794	cardiolipin biosynthesis	100	7 of 7
66794	folate polyglutamylation	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	phenylalanine metabolism	92.31	12 of 13
66794	Entner Doudoroff pathway	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	purine metabolism	86.17	81 of 94
66794	1,4-dihydroxy-6-naphthoate biosynthesis	83.33	5 of 6
66794	NAD metabolism	83.33	15 of 18
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	metabolism of disaccharids	81.82	9 of 11
66794	cellulose degradation	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	heme metabolism	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	pyrimidine metabolism	77.78	35 of 45
66794	degradation of hexoses	77.78	14 of 18
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	glycogen biosynthesis	75	3 of 4
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	pentose phosphate pathway	72.73	8 of 11
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	methionine metabolism	69.23	18 of 26
66794	histidine metabolism	68.97	20 of 29
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	alanine metabolism	65.52	19 of 29
66794	lipid metabolism	64.52	20 of 31
66794	degradation of pentoses	64.29	18 of 28
66794	citric acid cycle	64.29	9 of 14
66794	degradation of sugar acids	64	16 of 25
66794	d-xylose degradation	63.64	7 of 11
66794	tryptophan metabolism	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	ketogluconate metabolism	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	urea cycle	61.54	8 of 13
66794	non-pathway related	60.53	23 of 38
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	carotenoid biosynthesis	59.09	13 of 22
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	propanol degradation	57.14	4 of 7
66794	4-hydroxymandelate degradation	55.56	5 of 9
66794	proline metabolism	54.55	6 of 11
66794	cholesterol biosynthesis	54.55	6 of 11
66794	sulfate reduction	53.85	7 of 13
66794	lysine metabolism	52.38	22 of 42
66794	cyclohexanol degradation	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	catecholamine biosynthesis	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	cysteine metabolism	50	9 of 18
66794	quinate degradation	50	1 of 2
66794	myo-inositol biosynthesis	50	5 of 10
66794	butanoate fermentation	50	2 of 4
66794	ascorbate metabolism	50	11 of 22
66794	glycine metabolism	50	5 of 10
66794	oxidative phosphorylation	47.25	43 of 91
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	glutathione metabolism	42.86	6 of 14
66794	gallate degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	vitamin K metabolism	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	polyamine pathway	39.13	9 of 23
66794	arachidonic acid metabolism	38.89	7 of 18
66794	carnitine metabolism	37.5	3 of 8
66794	sphingosine metabolism	33.33	2 of 6
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	IAA biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	phenol degradation	30	6 of 20
66794	vitamin B6 metabolism	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	biotin biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	alginate biosynthesis	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	vitamin B12 metabolism	20.59	7 of 34

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
4255	-	-	+/-	-	-	+/-	-	-	-	-	+	+	+/-	+	+	+/-	+	+	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
4255	-	-	-	-	-	+	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-
4255	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	-
#Condition	#Acidic

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
4255	acidic mineral environment	Japan	JPN	Asia
67770	Mine at Okayama Pref.	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence NR_074106 (>99% sequence identity) for Acidobacterium capsulatum subclade from Microbeatlas

Aquatic Samples	835
Soil Samples	2976
Animal Samples	10178
Plant Samples	434
Total Samples	14423

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4255	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2256v1 assembly for Acidobacterium capsulatum ATCC 51196	complete	GCA_000022565	240015.3	643692001	240015	98.45

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Acidobacterium capsulatum gene for 16S rRNA, partial sequence	D26171	1422	33075
67770	Acidobacterium capsulatum ATCC 51196 16S ribosomal RNA, partial sequence	NR_043386	1424	240015
67770	Acidobacterium capsulatum ATCC 51196 16S ribosomal RNA, partial sequence	NR_074106	1493	240015

GC content

@ref	GC-content (mol%)
22887	59.9-60.8
4255	60

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2256v1 assembly for Acidobacterium capsulatum ATCC 51196
BV-BRC: 240015.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.21	no
125439	gram_stain	BacteriaNetⓘ	negative	94.44	no
125439	motility	BacteriaNetⓘ	no	70.76	no
125439	spore_formation	BacteriaNetⓘ	no	95.57	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acidobacterium capsulatum ATCC 51196 ATCC 51196
NCBI: GCA_000022565.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	90.00	no
125438	anaerobic	anaerobicⓘ	no	87.92	no
125438	aerobic	aerobicⓘ	yes	78.12	no
125438	spore-forming	spore-formingⓘ	no	81.01	no
125438	thermophilic	thermophileⓘ	no	89.58	yes
125438	flagellated	motile2+ⓘ	no	53.42	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Transcriptome	A respiro-fermentative strategy to survive nanoxia in Acidobacterium capsulatum.	Trojan D, Garcia-Robledo E, Hausmann B, Revsbech NP, Woebken D, Eichorst SA.	FEMS Microbiol Ecol	10.1093/femsec/fiae152	2024
Metabolism	pH gradient-induced heterogeneity of Fe(III)-reducing microorganisms in coal mining-associated lake sediments.	Blothe M, Akob DM, Kostka JE, Goschel K, Drake HL, Kusel K.	Appl Environ Microbiol	10.1128/aem.01194-07	2008
Enzymology	Quantification of Tinto River sediment microbial communities: importance of sulfate-reducing bacteria and their role in attenuating acid mine drainage.	Sanchez-Andrea I, Knittel K, Amann R, Amils R, Sanz JL.	Appl Environ Microbiol	10.1128/aem.00848-12	2012
Enzymology	A microbial oasis in the hypersaline Atacama subsurface discovered by a life detector chip: implications for the search for life on Mars.	Parro V, de Diego-Castilla G, Moreno-Paz M, Blanco Y, Cruz-Gil P, Rodriguez-Manfredi JA, Fernandez-Remolar D, Gomez F, Gomez MJ, Rivas LA, Demergasso C, Echeverria A, Urtuvia VN, Ruiz-Bermejo M, Garcia-Villadangos M, Postigo M, Sanchez-Roman M, Chong-Diaz G, Gomez-Elvira J.	Astrobiology	10.1089/ast.2011.0654	2011
	Diversity and Biotechnological Potential of Cultivable Halophilic and Halotolerant Bacteria from the "Los Negritos" Geothermal Area.	Guevara-Luna J, Arroyo-Herrera I, Tapia-Garcia EY, Estrada-de Los Santos P, Ortega-Nava AJ, Vasquez-Murrieta MS.	Microorganisms	10.3390/microorganisms12030482	2024
	Low base-substitution mutation rate and predominance of insertion-deletion events in the acidophilic bacterium Acidobacterium capsulatum.	Kucukyildirim S, Miller SF, Lynch M.	Ecol Evol	10.1002/ece3.8429	2021
	Comparison of pH and bacterial communities in the rumen and reticulum during fattening of Japanese Black beef cattle	Ogata T, Kim Y, Iwamoto E, Masaki T, Ikuta K, Sato S.	Animal Science Journal.		2020
	Discovery of a novel methionine biosynthetic route via O-phospho-l-homoserine.	Hasebe F, Adachi K, Maruyama C, Hamano Y.	Appl Environ Microbiol	10.1128/aem.01247-24	2024
Metabolism	Comparison of pH and bacterial communities in the rumen and reticulum during fattening of Japanese Black beef cattle.	Ogata T, Kim YH, Iwamoto E, Masaki T, Ikuta K, Sato S.	Anim Sci J	10.1111/asj.13487	2020
	Building a Cell House from Cellulose: The Case of the Soil Acidobacterium Acidisarcina polymorpha SBC82^T.	Belova SE, Naumoff DG, Suzina NE, Kovalenko VV, Loiko NG, Sorokin VV, Dedysh SN.	Microorganisms	10.3390/microorganisms10112253	2022
Genetics	The Microbiome of Catfish (Ictalurus punctatus) Treated with Natural Preservatives During Refrigerated Storage.	Lee JL, Yourek G.	Microorganisms	10.3390/microorganisms13020244	2025
Enzymology	Microaerobic Lifestyle at Nanomolar O₂ Concentrations Mediated by Low-Affinity Terminal Oxidases in Abundant Soil Bacteria.	Trojan D, Garcia-Robledo E, Meier DV, Hausmann B, Revsbech NP, Eichorst SA, Woebken D.	mSystems	10.1128/msystems.00250-21	2021
	Benchmarking informatics workflows for data-independent acquisition single-cell proteomics.	Wang J, Huang Y, Lu F, Xu Q, Yang Z, Jiang Y, Shi S, Pan J, Yang Y, Fang Q.	Nat Commun	10.1038/s41467-025-65174-4	2025
	Seq2Phase: language model-based accurate prediction of client proteins in liquid-liquid phase separation.	Miyata K, Iwasaki W.	Bioinform Adv	10.1093/bioadv/vbad189	2024
	The potential role of liquid-liquid phase separation in the cellular fate of the compartments for unconventional protein secretion.	Mendes LFS, Gimenes CO, da Silva MDO, Rout SK, Riek R, Costa-Filho AJ.	Protein Sci	10.1002/pro.5085	2024
Phylogeny	Reclassification of Chromobacterium violaceum ATCC 31532 and its quorum biosensor mutant CV026 to Chromobacterium subtsugae.	Harrison AM, Soby SD.	AMB Express	10.1186/s13568-020-01140-1	2020
Genetics	Genomic Characteristics Distinguish Geographically Distributed Dehalococcoidia.	Yang Y, Zhang Y, Capiro NL, Yan J.	Front Microbiol	10.3389/fmicb.2020.546063	2020
	Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding.	Chen H, Egger M, Xu X, Flemmich L, Krasheninina O, Sun A, Micura R, Ren A.	Nucleic Acids Res	10.1093/nar/gkaa1029	2020
Genetics	Comparative Genomic Analysis Reveals Preserved Features in Organohalide-Respiring Sulfurospirillum Strains.	Yang Y, Schubert T, Lv Y, Li X, Yan J.	mSphere	10.1128/msphere.00931-21	2022
Genetics	Recent Understanding of Soil Acidobacteria and Their Ecological Significance: A Critical Review.	Kalam S, Basu A, Ahmad I, Sayyed RZ, El-Enshasy HA, Dailin DJ, Suriani NL.	Front Microbiol	10.3389/fmicb.2020.580024	2020
	Synthesis of a pseudo-disaccharide library and its application to the characterisation of the heparanase catalytic site.	Vinader V, Haji-Abdullahi MH, Patterson LH, Afarinkia K.	PLoS One	10.1371/journal.pone.0082111	2013
Enzymology	Characterization of putative pathogenic Shewanella algae isolated from ballast water.	Ibrahim NNN, Nasir NM, Sahrani FK, Ahmad A, Sairi F.	Vet World	10.14202/vetworld.2021.678-688	2021
Phylogeny	Phylogenetic Revision of the Genus Aliivibrio: Intra- and Inter-Species Variance Among Clusters Suggest a Wider Diversity of Species.	Klemetsen T, Karlsen CR, Willassen NP.	Front Microbiol	10.3389/fmicb.2021.626759	2021
Enzymology	The chitinase C gene PsChiC from Pseudomonas sp. and its synergistic effects on larvicidal activity.	Zhong W, Ding S, Guo H.	Genet Mol Biol	10.1590/s1415-475738320140320	2015
	Comparative Genomic Analysis of Soil Dwelling Bacteria Utilizing a Combinational Codon Usage and Molecular Phylogenetic Approach Accentuating on Key Housekeeping Genes.	Saha J, Saha BK, Pal Sarkar M, Roy V, Mandal P, Pal A.	Front Microbiol	10.3389/fmicb.2019.02896	2019
Metabolism	What Is the Role of Archaea in Plants? New Insights from the Vegetation of Alpine Bogs.	Taffner J, Erlacher A, Bragina A, Berg C, Moissl-Eichinger C, Berg G.	mSphere	10.1128/msphere.00122-18	2018
Genetics	Comparative genomics of the proteostasis network in extreme acidophiles.	Izquierdo-Fiallo K, Munoz-Villagran C, Orellana O, Sjoberg R, Levican G.	PLoS One	10.1371/journal.pone.0291164	2023
Phylogeny	Reanalysis of the Mars500 experiment reveals common gut microbiome alterations in astronauts induced by long-duration confinement.	Brereton NJB, Pitre FE, Gonzalez E.	Comput Struct Biotechnol J	10.1016/j.csbj.2021.03.040	2021
	Large-Scale Molecular Evolutionary Analysis Uncovers a Variety of Polynucleotide Kinase Clp1 Family Proteins in the Three Domains of Life.	Saito M, Sato A, Nagata S, Tamaki S, Tomita M, Suzuki H, Kanai A.	Genome Biol Evol	10.1093/gbe/evz195	2019
Metabolism	Association of purine asymmetry, strand-biased gene distribution and PolC within Firmicutes and beyond: a new appraisal.	Saha SK, Goswami A, Dutta C.	BMC Genomics	10.1186/1471-2164-15-430	2014
Proteome	HarmonizR enables data harmonization across independent proteomic datasets with appropriate handling of missing values.	Voss H, Schlumbohm S, Barwikowski P, Wurlitzer M, Dottermusch M, Neumann P, Schluter H, Neumann JE, Krisp C.	Nat Commun	10.1038/s41467-022-31007-x	2022
	Primary Shewanella algae bacteremia mimicking Vibrio septicemia.	Myung DS, Jung YS, Kang SJ, Song YA, Park KH, Jung SI, Kim SH, Shin JH.	J Korean Med Sci	10.3346/jkms.2009.24.6.1192	2009
	Structural properties of 2/2 hemoglobins: the group III protein from Helicobacter hepaticus.	Nothnagel HJ, Winer BY, Vuletich DA, Pond MP, Lecomte JT.	IUBMB Life	10.1002/iub.430	2011
	Draft-genome sequence of Shewanella algae strain C6G3.	Aigle A, Michotey V, Bonin P.	Stand Genomic Sci	10.1186/s40793-015-0022-0	2015
	Veillonella, Firmicutes: Microbes disguised as Gram negatives.	Vesth T, Ozen A, Andersen SC, Kaas RS, Lukjancenko O, Bohlin J, Nookaew I, Wassenaar TM, Ussery DW.	Stand Genomic Sci	10.4056/sigs.2981345	2013
Enzymology	A robust PCR primer design platform applied to the detection of Acidobacteria Group 1 in soil.	Gans JD, Dunbar J, Eichorst SA, Gallegos-Graves LV, Wolinsky M, Kuske CR.	Nucleic Acids Res	10.1093/nar/gks238	2012
Enzymology	A novel salt-tolerant chitobiosidase discovered by genetic screening of a metagenomic library derived from chitin-amended agricultural soil.	Cretoiu MS, Berini F, Kielak AM, Marinelli F, van Elsas JD.	Appl Microbiol Biotechnol	10.1007/s00253-015-6639-5	2015
	Manipulating the Expression of Small Secreted Protein 1 (Ssp1) Alters Patterns of Development and Metabolism in the White-Rot Fungus Pleurotus ostreatus.	Feldman D, Amedi N, Carmeli S, Yarden O, Hadar Y.	Appl Environ Microbiol	10.1128/aem.00761-19	2019
Enzymology	Investigation of Legionella Contamination in Bath Water Samples by Culture, Amoebic Co-Culture, and Real-Time Quantitative PCR Methods.	Edagawa A, Kimura A, Kawabuchi-Kurata T, Adachi S, Furuhata K, Miyamoto H.	Int J Environ Res Public Health	10.3390/ijerph121013118	2015
Biotechnology	First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking.	Sekiguchi Y, Ohashi A, Parks DH, Yamauchi T, Tyson GW, Hugenholtz P.	PeerJ	10.7717/peerj.740	2015
Metabolism	Extreme Low Cytosolic pH Is a Signal for Cell Survival in Acid Stressed Yeast.	Lucena RM, Dolz-Edo L, Brul S, de Morais MA, Smits G.	Genes (Basel)	10.3390/genes11060656	2020
Transcriptome	Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities.	Stewart FJ, Sharma AK, Bryant JA, Eppley JM, DeLong EF.	Genome Biol	10.1186/gb-2011-12-3-r26	2011
	Comprehensive prediction of chromosome dimer resolution sites in bacterial genomes.	Kono N, Arakawa K, Tomita M.	BMC Genomics	10.1186/1471-2164-12-19	2011
Pathogenicity	Treatment failure due to emergence of resistance to carbapenem during therapy for Shewanella algae bacteremia.	Kim DM, Kang CI, Lee CS, Kim HB, Kim EC, Kim NJ, Oh MD, Choe KW.	J Clin Microbiol	10.1128/jcm.44.3.1172-1174.2006	2006
Phylogeny	A diverse group of halophilic bacteria exist in Lunsu, a natural salt water body of Himachal Pradesh, India.	Gupta S, Sharma P, Dev K, Srivastava M, Sourirajan A.	Springerplus	10.1186/s40064-015-1028-1	2015
Metabolism	Biomarker panels for characterizing microbial community biofilm formation as composite molecular process.	Bosse M, Heuwieser A, Heinzel A, Lukas A, Oliveira G, Mayer B.	PLoS One	10.1371/journal.pone.0202032	2018
	Bioprospecting metagenomics of decaying wood: mining for new glycoside hydrolases.	Li LL, Taghavi S, McCorkle SM, Zhang YB, Blewitt MG, Brunecky R, Adney WS, Himmel ME, Brumm P, Drinkwater C, Mead DA, Tringe SG, Lelie Dv.	Biotechnol Biofuels	10.1186/1754-6834-4-23	2011
Pathogenicity	Mycobacterium llatzerense, a waterborne Mycobacterium, that resists phagocytosis by Acanthamoeba castellanii.	Delafont V, Samba-Louaka A, Cambau E, Bouchon D, Moulin L, Hechard Y.	Sci Rep	10.1038/srep46270	2017
Metabolism	CorE from Myxococcus xanthus is a copper-dependent RNA polymerase sigma factor.	Gomez-Santos N, Perez J, Sanchez-Sutil MC, Moraleda-Munoz A, Munoz-Dorado J.	PLoS Genet	10.1371/journal.pgen.1002106	2011
Enzymology	Mutation of L-2,3-diaminopropionic acid synthase genes blocks staphyloferrin B synthesis in Staphylococcus aureus.	Beasley FC, Cheung J, Heinrichs DE.	BMC Microbiol	10.1186/1471-2180-11-199	2011
Enzymology	Evolution of DNA ligases of nucleo-cytoplasmic large DNA viruses of eukaryotes: a case of hidden complexity.	Yutin N, Koonin EV.	Biol Direct	10.1186/1745-6150-4-51	2009
Phylogeny	Novel and unexpected bacterial diversity in an arsenic-rich ecosystem revealed by culture-dependent approaches.	Delavat F, Lett MC, Lievremont D.	Biol Direct	10.1186/1745-6150-7-28	2012
Metabolism	Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria.	Eichorst SA, Kuske CR, Schmidt TM.	Appl Environ Microbiol	10.1128/aem.01080-10	2011
	Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements.	Makarova KS, Wolf YI, van der Oost J, Koonin EV.	Biol Direct	10.1186/1745-6150-4-29	2009
Enzymology	Molecular evolution of urea amidolyase and urea carboxylase in fungi.	Strope PK, Nickerson KW, Harris SD, Moriyama EN.	BMC Evol Biol	10.1186/1471-2148-11-80	2011
Phylogeny	Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria.	Eichorst SA, Breznak JA, Schmidt TM.	Appl Environ Microbiol	10.1128/aem.02140-06	2007
	High-density microarray of small-subunit ribosomal DNA probes.	Wilson KH, Wilson WJ, Radosevich JL, DeSantis TZ, Viswanathan VS, Kuczmarski TA, Andersen GL.	Appl Environ Microbiol	10.1128/aem.68.5.2535-2541.2002	2002
Genetics	A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling.	D'Amore R, Ijaz UZ, Schirmer M, Kenny JG, Gregory R, Darby AC, Shakya M, Podar M, Quince C, Hall N.	BMC Genomics	10.1186/s12864-015-2194-9	2016
Metabolism	A Burkholderia cepacia complex non-ribosomal peptide-synthesized toxin is hemolytic and required for full virulence.	Thomson EL, Dennis JJ.	Virulence	10.4161/viru.19355	2012
Metabolism	Methylotrophic autotrophy in Beijerinckia mobilis.	Dedysh SN, Smirnova KV, Khmelenina VN, Suzina NE, Liesack W, Trotsenko YA.	J Bacteriol	10.1128/jb.187.11.3884-3888.2005	2005
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
Phylogeny	The origin of multicellularity in cyanobacteria.	Schirrmeister BE, Antonelli A, Bagheri HC.	BMC Evol Biol	10.1186/1471-2148-11-45	2011
Enzymology	New strategies for cultivation and detection of previously uncultured microbes.	Stevenson BS, Eichorst SA, Wertz JT, Schmidt TM, Breznak JA.	Appl Environ Microbiol	10.1128/aem.70.8.4748-4755.2004	2004
	Acid-tolerant bacteria and prospects in industrial and environmental applications.	Mallick S, Das S.	Appl Microbiol Biotechnol	10.1007/s00253-023-12529-w	2023
	Enhancing rhizoremediation of petroleum hydrocarbons through bioaugmentation with a plant growth-promoting bacterial consortium.	Eze MO, Thiel V, Hose GC, George SC, Daniel R.	Chemosphere	10.1016/j.chemosphere.2021.133143	2022
	Evolutionary history of the DNA repair protein, Ku, in eukaryotes and prokaryotes.	Rijal S, Mainali A, Acharya S, Bhattarai HK.	PLoS One	10.1371/journal.pone.0308593	2025
	Microbial Consortium of Streptomyces spp. from Mining Environments Enhances Phytoremediation Potential of Lemna minor L.	Djebaili R, Farda B, Gialdini O, Vaccarelli I, Rezaee Danesh Y, Pellegrini M.	Plants (Basel)	10.3390/plants14223467	2025
Phylogeny	Prospecting cellulolytic bacteria from white grubs (Holotrichia serrata (F.) and Leucopholis coneophora Burmeister) native to Karnataka region.	Vishnu Vyasa G, Narasingappa RB, Prakash KV, Bhavani P, Gagandeep KR.	BMC Microbiol	10.1186/s12866-025-03805-y	2025
Genetics	Hidden Markov Model-Based Prokaryotic Genome Space Mining Reveals the Widespread Pervasiveness of Complex I and Its Potential Evolutionary Scheme.	Shirsath A, Khairnar SV, Anand A, Prabhakaran DM, Anand A.	Genome Biol Evol	10.1093/gbe/evaf154	2025
	Characteristics of an Iron-Reducing, Moderately Acidophilic Actinobacterium Isolated from Pyritic Mine Waste, and Its Potential Role in Mitigating Mineral Dissolution in Mineral Tailings Deposits.	Nancucheo I, Johnson DB.	Microorganisms	10.3390/microorganisms8070990	2020
Genetics	Phylogeny analysis of whole protein-coding genes in metagenomic data detected an environmental gradient for the microbiota.	Satoh S, Tanaka R, Yokono M, Endoh D, Yabuki T, Tanaka A.	PLoS One	10.1371/journal.pone.0281288	2023
	Full-Length NAD⁺-I Riboswitches Bind a Single Cofactor but Cannot Discriminate against Adenosine Triphosphate.	Srivastava Y, Blau ME, Jenkins JL, Wedekind JE.	Biochemistry	10.1021/acs.biochem.3c00391	2023
	4-O-Substituted Glucuronic Cyclophellitols are Selective Mechanism-Based Heparanase Inhibitors.	Borlandelli V, Armstrong Z, Nin-Hill A, Codee JDC, Raich L, Artola M, Rovira C, Davies GJ, Overkleeft HS.	ChemMedChem	10.1002/cmdc.202200580	2023
Metabolism	Acidobacteria from oligotrophic soil from the Cerrado can grow in a wide range of carbon source concentrations.	de Castro VH, Schroeder LF, Quirino BF, Kruger RH, Barreto CC.	Can J Microbiol	10.1139/cjm-2013-0331	2013
	Soil microbiota and microarthropod communities in oil contaminated sites in the European Subarctic.	Melekhina EN, Belykh ES, Markarova MY, Taskaeva AA, Rasova EE, Baturina OA, Kabilov MR, Velegzhaninov IO.	Sci Rep	10.1038/s41598-021-98680-8	2021
	Genome-centric metagenomics reveals insights into the evolution and metabolism of a new free-living group in Rhizobiales.	Lemos LN, de Carvalho FM, Gerber A, Guimaraes APC, Jonck CR, Ciapina LP, de Vasconcelos ATR.	BMC Microbiol	10.1186/s12866-021-02354-4	2021
	Purification and Functional Characterization of a Soluble Trehalase in Lissorhoptrus oryzophilus (Coleoptera: Curculionidae).	Wang Q, Fang K, Qi L, Wang X, Pan Y, Li Y, Xi J, Zhang J.	Insects	10.3390/insects13100867	2022
Pathogenicity	Metagenomic profiling of antibiotic resistance and virulence removal: Activated sludge vs. algal wastewater treatment system.	Cheng X, Xu J, Smith G, Nirmalakhandan N, Zhang Y.	J Environ Manage	10.1016/j.jenvman.2021.113129	2021
Metabolism	Cloning and expression of a gene with phospholipase B activity from Pseudomonas fluorescens in Escherichia coli.	Jiang F, Huang S, Imadad K, Li C.	Bioresour Technol	10.1016/j.biortech.2011.09.112	2012
	Progress in Stereoselective Construction of C-C Bonds Enabled by Aldolases and Hydroxynitrile Lyases.	Liu M, Wei D, Wen Z, Wang JB.	Front Bioeng Biotechnol	10.3389/fbioe.2021.653682	2021
	Heparanase in cancer progression: Structure, substrate recognition and therapeutic potential.	Yuan F, Yang Y, Zhou H, Quan J, Liu C, Wang Y, Zhang Y, Yu X.	Front Chem	10.3389/fchem.2022.926353	2022
	Synthesis of (R)-mandelic acid and (R)-mandelic acid amide by recombinant E. coli strains expressing a (R)-specific oxynitrilase and an arylacetonitrilase.	Muller E, Sosedov O, Groning JAD, Stolz A.	Biotechnol Lett	10.1007/s10529-020-02998-8	2021
	Mechanism-based heparanase inhibitors reduce cancer metastasis in vivo.	de Boer C, Armstrong Z, Lit VAJ, Barash U, Ruijgrok G, Boyango I, Weitzenberg MM, Schroder SP, Sarris AJC, Meeuwenoord NJ, Bule P, Kayal Y, Ilan N, Codee JDC, Vlodavsky I, Overkleeft HS, Davies GJ, Wu L.	Proc Natl Acad Sci U S A	10.1073/pnas.2203167119	2022
	Discovery of Highly Active Recombinant PNGase H⁺ Variants Through the Rational Exploration of Unstudied Acidobacterial Genomes.	Guo RR, Comamala G, Yang HH, Gramlich M, Du YM, Wang T, Zeck A, Rand KD, Liu L, Voglmeir J.	Front Bioeng Biotechnol	10.3389/fbioe.2020.00741	2020
	The Bladder Microbiome Is Associated with Epithelial-Mesenchymal Transition in Muscle Invasive Urothelial Bladder Carcinoma.	Li WT, Iyangar AS, Reddy R, Chakladar J, Bhargava V, Sakamoto K, Ongkeko WM, Rajasekaran M.	Cancers (Basel)	10.3390/cancers13153649	2021
Genetics	Diversity and metagenome analysis of a hydrocarbon-degrading bacterial consortium from asphalt lakes located in Wietze, Germany.	Eze MO, Hose GC, George SC, Daniel R.	AMB Express	10.1186/s13568-021-01250-4	2021
	Identification of the Acidobacterium capsulatum LexA box reveals a lateral acquisition of the Alphaproteobacteria lexA gene.	Mazon G, Campoy S, Erill I, Barbe J.	Microbiology (Reading)	10.1099/mic.0.28376-0	2006
	Identification and characterization of the gene encoding the Acidobacterium capsulatum major sigma factor.	Sabree ZL, Bergendahl V, Liles MR, Burgess RR, Goodman RM, Handelsman J.	Gene	10.1016/j.gene.2006.02.033	2006
Metabolism	Legume-microbiome interactions unlock mineral nutrients in regrowing tropical forests.	Epihov DZ, Saltonstall K, Batterman SA, Hedin LO, Hall JS, van Breugel M, Leake JR, Beerling DJ.	Proc Natl Acad Sci U S A	10.1073/pnas.2022241118	2021
	Exploring the sequence-function space of microbial fucosidases.	Martinez Gascuena A, Wu H, Wang R, Owen CD, Hernando PJ, Monaco S, Penner M, Xing K, Le Gall G, Gardner R, Ndeh D, Urbanowicz PA, Spencer DIR, Walsh M, Angulo J, Juge N.	Commun Chem	10.1038/s42004-024-01212-4	2024
	Structural and Biochemical Basis of a Marine Bacterial Glycoside Hydrolase Family 2 beta-Glycosidase with Broad Substrate Specificity.	Yang J, Li S, Liu Y, Li R, Long L.	Appl Environ Microbiol	10.1128/aem.02226-21	2022
Metabolism	Evidence that the potential for dissimilatory ferric iron reduction is widespread among acidophilic heterotrophic bacteria.	Coupland K, Johnson DB.	FEMS Microbiol Lett	10.1111/j.1574-6968.2007.00998.x	2008
Phylogeny	Diversity and in situ quantification of Acidobacteria subdivision 1 in an acidic mining lake.	Kleinsteuber S, Muller FD, Chatzinotas A, Wendt-Potthoff K, Harms H.	FEMS Microbiol Ecol	10.1111/j.1574-6941.2007.00402.x	2008
	Microbiome and related structural features of Earth's most archaic plant indicate early plant symbiosis attributes.	Satjarak A, Golinski GK, Trest MT, Graham LE.	Sci Rep	10.1038/s41598-022-10186-z	2022
	Uncovering Hidden Members and Functions of the Soil Microbiome Using De Novo Metaproteomics.	Lee JY, Mitchell HD, Burnet MC, Wu R, Jenson SC, Merkley ED, Nakayasu ES, Nicora CD, Jansson JK, Burnum-Johnson KE, Payne SH.	J Proteome Res	10.1021/acs.jproteome.2c00334	2022
Phylogeny	Microbial communities in a porphyry copper tailings impoundment and their impact on the geochemical dynamics of the mine waste.	Diaby N, Dold B, Pfeifer HR, Holliger C, Johnson DB, Hallberg KB.	Environ Microbiol	10.1111/j.1462-2920.2006.01138.x	2007
	Gut diversity and the resistome as biomarkers of febrile neutropenia outcome in paediatric oncology patients undergoing hematopoietic stem cell transplantation.	Sardzikova S, Andrijkova K, Svec P, Beke G, Klucar L, Minarik G, Bielik V, Kolenova A, Soltys K.	Sci Rep	10.1038/s41598-024-56242-8	2024
	In silico studies on bacterial xylanase enzyme: Structural and functional insight.	Dutta B, Banerjee A, Chakraborty P, Bandopadhyay R.	J Genet Eng Biotechnol	10.1016/j.jgeb.2018.05.003	2018
	Purification and characterization of an acid trehalase from Acidobacterium capsulatum.	Inagaki K, Ueno N, Tamura T, Tanaka H.	J Biosci Bioeng	10.1263/jbb.91.141	2001
Phylogeny	Recovery of novel bacterial diversity from a forested wetland impacted by reject coal.	Brofft JE, McArthur JV, Shimkets LJ.	Environ Microbiol	10.1046/j.1462-2920.2002.00337.x	2002
	Gene cloning and characterization of an acidic xylanase from Acidobacterium capsulatum.	Inagaki K, Nakahira K, Mukai K, Tamura T, Tanaka H.	Biosci Biotechnol Biochem	10.1271/bbb.62.1061	1998
Pathogenicity	Inducible aluminum resistance of Acidiphilium cryptum and aluminum tolerance of other acidophilic bacteria.	Fischer J, Quentmeier A, Gansel S, Sabados V, Friedrich CG.	Arch Microbiol	10.1007/s00203-002-0482-7	2002
Genetics	Hydrolytic Capabilities as a Key to Environmental Success: Chitinolytic and Cellulolytic Acidobacteria From Acidic Sub-arctic Soils and Boreal Peatlands.	Belova SE, Ravin NV, Pankratov TA, Rakitin AL, Ivanova AA, Beletsky AV, Mardanov AV, Sinninghe Damste JS, Dedysh SN.	Front Microbiol	10.3389/fmicb.2018.02775	2018
Enzymology	Structural and biochemical characterization of glycoside hydrolase family 79 beta-glucuronidase from Acidobacterium capsulatum.	Michikawa M, Ichinose H, Momma M, Biely P, Jongkees S, Yoshida M, Kotake T, Tsumuraya Y, Withers SG, Fujimoto Z, Kaneko S.	J Biol Chem	10.1074/jbc.m112.346288	2012
Genetics	GAL08, an Uncultivated Group of Acidobacteria, Is a Dominant Bacterial Clade in a Neutral Hot Spring.	Ruhl IA, Sheremet A, Furgason CC, Krause S, Bowers RM, Jarett JK, Tran TM, Grasby SE, Woyke T, Dunfield PF.	Front Microbiol	10.3389/fmicb.2021.787651	2021
Phylogeny	Phylogenetic position of the menaquinone-containing acidophilic chemo-organotroph Acidobacterium capsulatum.	Hiraishi A, Kishimoto N, Kosako Y, Wakao N, Tano T.	FEMS Microbiol Lett	10.1111/j.1574-6968.1995.tb07816.x	1995
	Impact of cultivation on characterisation of species composition of soil bacterial communities.	McCaig AE, Grayston SJ, Prosser JI, Glover LA.	FEMS Microbiol Ecol	10.1111/j.1574-6941.2001.tb00786.x	2001
	FoQDE2-dependent milRNA promotes Fusarium oxysporum f. sp. cubense virulence by silencing a glycosyl hydrolase coding gene expression.	Li M, Xie L, Wang M, Lin Y, Zhong J, Zhang Y, Zeng J, Kong G, Xi P, Li H, Ma LJ, Jiang Z.	PLoS Pathog	10.1371/journal.ppat.1010157	2022
	Comparative Genomics on Cultivated and Uncultivated Freshwater and Marine "Candidatus Manganitrophaceae" Species Implies Their Worldwide Reach in Manganese Chemolithoautotrophy.	Yu H, Chadwick GL, Lingappa UF, Leadbetter JR.	mBio	10.1128/mbio.03421-21	2022
Genetics	A comprehensive survey of integron-associated genes present in metagenomes.	Buongermino Pereira M, Osterlund T, Eriksson KM, Backhaus T, Axelson-Fisk M, Kristiansson E.	BMC Genomics	10.1186/s12864-020-06830-5	2020
Enzymology	Genomic Analyses of the Quinol Oxidases and/or Quinone Reductases Involved in Bacterial Extracellular Electron Transfer.	Zhong Y, Shi L.	Front Microbiol	10.3389/fmicb.2018.03029	2018
Metabolism	Identification of the metabolically active members of a bacterial community in a polychlorinated biphenyl-polluted moorland soil.	Nogales B, Moore ER, Abraham WR, Timmis KN.	Environ Microbiol	10.1046/j.1462-2920.1999.00024.x	1999
Genetics	Pheno- and Genotyping of Hopanoid Production in Acidobacteria.	Damste JSS, Rijpstra WIC, Dedysh SN, Foesel BU, Villanueva L.	Front Microbiol	10.3389/fmicb.2017.00968	2017
Metabolism	Heparanase Activates Antithrombin through the Binding to Its Heparin Binding Site.	Bohdan N, Espin S, Aguila S, Teruel-Montoya R, Vicente V, Corral J, Martinez-Martinez I.	PLoS One	10.1371/journal.pone.0157834	2016
Phylogeny	Detection and in situ identification of representatives of a widely distributed new bacterial phylum.	Ludwig W, Bauer SH, Bauer M, Held I, Kirchhof G, Schulze R, Huber I, Spring S, Hartmann A, Schleifer KH.	FEMS Microbiol Lett	10.1111/j.1574-6968.1997.tb10480.x	1997
	In Silico Characterization and Phylogenetic Distribution of Extracellular Matrix Components in the Model Rhizobacteria Pseudomonas fluorescens F113 and Other Pseudomonads.	Blanco-Romero E, Garrido-Sanz D, Rivilla R, Redondo-Nieto M, Martin M.	Microorganisms	10.3390/microorganisms8111740	2020
Genetics	Molecular Mechanisms Underpinning Aggregation in Acidiphilium sp. C61 Isolated from Iron-Rich Pelagic Aggregates.	Li Q, Cooper RE, Wegner CE, Kusel K.	Microorganisms	10.3390/microorganisms8030314	2020
	Kinetic analysis and molecular modeling of the inhibition mechanism of roneparstat (SST0001) on human heparanase.	Pala D, Rivara S, Mor M, Milazzo FM, Roscilli G, Pavoni E, Giannini G.	Glycobiology	10.1093/glycob/cww003	2016
Phylogeny	Archaea dominate the microbial community in an ecosystem with low-to-moderate temperature and extreme acidity.	Korzhenkov AA, Toshchakov SV, Bargiela R, Gibbard H, Ferrer M, Teplyuk AV, Jones DL, Kublanov IV, Golyshin PN, Golyshina OV.	Microbiome	10.1186/s40168-019-0623-8	2019
Genetics	Phylogenetic Tracings of Proteome Size Support the Gradual Accretion of Protein Structural Domains and the Early Origin of Viruses from Primordial Cells.	Nasir A, Kim KM, Caetano-Anolles G.	Front Microbiol	10.3389/fmicb.2017.01178	2017
	Genomic insights into the Acidobacteria reveal strategies for their success in terrestrial environments.	Eichorst SA, Trojan D, Roux S, Herbold C, Rattei T, Woebken D.	Environ Microbiol	10.1111/1462-2920.14043	2018
Genetics	What Is in Umbilicaria pustulata? A Metagenomic Approach to Reconstruct the Holo-Genome of a Lichen.	Greshake Tzovaras B, Segers FHID, Bicker A, Dal Grande F, Otte J, Anvar SY, Hankeln T, Schmitt I, Ebersberger I.	Genome Biol Evol	10.1093/gbe/evaa049	2020
Enzymology	A novel metagenomic short-chain dehydrogenase/reductase attenuates Pseudomonas aeruginosa biofilm formation and virulence on Caenorhabditis elegans.	Bijtenhoorn P, Mayerhofer H, Muller-Dieckmann J, Utpatel C, Schipper C, Hornung C, Szesny M, Grond S, Thurmer A, Brzuszkiewicz E, Daniel R, Dierking K, Schulenburg H, Streit WR.	PLoS One	10.1371/journal.pone.0026278	2011
	Microbiome and Biocatalytic Bacteria in Monkey Cup (Nepenthes Pitcher) Digestive Fluid.	Chan XY, Hong KW, Yin WF, Chan KG.	Sci Rep	10.1038/srep20016	2016
Enzymology	High-yield novel leech hyaluronidase to expedite the preparation of specific hyaluronan oligomers.	Jin P, Kang Z, Zhang N, Du G, Chen J.	Sci Rep	10.1038/srep04471	2014
Metabolism	Structure-guided engineering of the substrate specificity of a fungal beta-glucuronidase toward triterpenoid saponins.	Lv B, Sun H, Huang S, Feng X, Jiang T, Li C.	J Biol Chem	10.1074/jbc.m117.801910	2018
Enzymology	Anaerobic consumers of monosaccharides in a moderately acidic fen.	Hamberger A, Horn MA, Dumont MG, Murrell JC, Drake HL.	Appl Environ Microbiol	10.1128/aem.00193-08	2008
	Empirical testing of 16S rRNA gene PCR primer pairs reveals variance in target specificity and efficacy not suggested by in silico analysis.	Morales SE, Holben WE.	Appl Environ Microbiol	10.1128/aem.02166-08	2009
Metabolism	Genome-Resolved Metagenomics and Detailed Geochemical Speciation Analyses Yield New Insights into Microbial Mercury Cycling in Geothermal Springs.	Gionfriddo CM, Stott MB, Power JF, Ogorek JM, Krabbenhoft DP, Wick R, Holt K, Chen LX, Thomas BC, Banfield JF, Moreau JW.	Appl Environ Microbiol	10.1128/aem.00176-20	2020
Enzymology	Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil.	Sait M, Davis KE, Janssen PH.	Appl Environ Microbiol	10.1128/aem.72.3.1852-1857.2006	2006
Genetics	Acidobacteria Subgroups and Their Metabolic Potential for Carbon Degradation in Sugarcane Soil Amended With Vinasse and Nitrogen Fertilizers.	de Chaves MG, Silva GGZ, Rossetto R, Edwards RA, Tsai SM, Navarrete AA.	Front Microbiol	10.3389/fmicb.2019.01680	2019
Phylogeny	Differential Response of Acidobacteria Subgroups to Forest-to-Pasture Conversion and Their Biogeographic Patterns in the Western Brazilian Amazon.	Navarrete AA, Venturini AM, Meyer KM, Klein AM, Tiedje JM, Bohannan BJ, Nusslein K, Tsai SM, Rodrigues JL.	Front Microbiol	10.3389/fmicb.2015.01443	2015
	Soil Acidobacterial 16S rRNA Gene Sequences Reveal Subgroup Level Differences between Savanna-Like Cerrado and Atlantic Forest Brazilian Biomes.	Catao EC, Lopes FA, Araujo JF, de Castro AP, Barreto CC, Bustamante MM, Quirino BF, Kruger RH.	Int J Microbiol	10.1155/2014/156341	2014
Enzymology	Evolutionary insights about bacterial GlxRS from whole genome analyses: is GluRS2 a chimera?	Dasgupta S, Basu G.	BMC Evol Biol	10.1186/1471-2148-14-26	2014
Metabolism	A Novel beta-Glucuronidase from Talaromyces pinophilus Li-93 Precisely Hydrolyzes Glycyrrhizin into Glycyrrhetinic Acid 3-O-Mono-beta-d-Glucuronide.	Xu Y, Feng X, Jia J, Chen X, Jiang T, Rasool A, Lv B, Qu L, Li C.	Appl Environ Microbiol	10.1128/aem.00755-18	2018
Metabolism	Production of glycolic acid by chemolithotrophic iron- and sulfur-oxidizing bacteria and its role in delineating and sustaining acidophilic sulfide mineral-oxidizing consortia.	Nancucheo I, Johnson DB.	Appl Environ Microbiol	10.1128/aem.01832-09	2010
Metabolism	Transport of magnesium by a bacterial Nramp-related gene.	Shin JH, Wakeman CA, Goodson JR, Rodionov DA, Freedman BG, Senger RS, Winkler WC.	PLoS Genet	10.1371/journal.pgen.1004429	2014
Phylogeny	Macroscopic streamer growths in acidic, metal-rich mine waters in north wales consist of novel and remarkably simple bacterial communities.	Hallberg KB, Coupland K, Kimura S, Johnson DB.	Appl Environ Microbiol	10.1128/aem.72.3.2022-2030.2006	2006
	Transfer and expression of degradative and antibiotic resistance plasmids in acidophilic bacteria.	Quentmeier A, Friedrich CG.	Appl Environ Microbiol	10.1128/aem.60.3.973-978.1994	1994
Phylogeny	Cytochrome P450 diversity in the tree of life.	Nelson DR.	Biochim Biophys Acta Proteins Proteom	10.1016/j.bbapap.2017.05.003	2018
	Long-term forest soil warming alters microbial communities in temperate forest soils.	DeAngelis KM, Pold G, Pold G, Topcuoglu BD, van Diepen LT, Varney RM, Blanchard JL, Melillo J, Frey SD.	Front Microbiol	10.3389/fmicb.2015.00104	2015
Phylogeny	Microbial diversity in anaerobic sediments at Rio Tinto, a naturally acidic environment with a high heavy metal content.	Sanchez-Andrea I, Rodriguez N, Amils R, Sanz JL.	Appl Environ Microbiol	10.1128/aem.00654-11	2011
Phylogeny	Analysis of bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA.	Duineveld BM, Kowalchuk GA, Keijzer A, van Elsas JD, van Veen JA.	Appl Environ Microbiol	10.1128/aem.67.1.172-178.2001	2001
Phylogeny	Pyrosequencing-based assessment of the bacteria diversity in surface and subsurface peat layers of a northern wetland, with focus on poorly studied phyla and candidate divisions.	Serkebaeva YM, Kim Y, Liesack W, Dedysh SN.	PLoS One	10.1371/journal.pone.0063994	2013
Metabolism	Nitrate-based niche differentiation by distinct sulfate-reducing bacteria involved in the anaerobic oxidation of methane.	Green-Saxena A, Dekas AE, Dalleska NF, Orphan VJ.	ISME J	10.1038/ismej.2013.147	2014
Metabolism	Bacterial chemolithoautotrophy via manganese oxidation.	Yu H, Leadbetter JR.	Nature	10.1038/s41586-020-2468-5	2020
Enzymology	Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia.	Janssen PH, Yates PS, Grinton BE, Taylor PM, Sait M.	Appl Environ Microbiol	10.1128/aem.68.5.2391-2396.2002	2002
Metabolism	Group IIC intron with an unusual target of integration in Enterobacter cloacae.	Rodriguez-Martinez JM, Nordmann P, Poirel L.	J Bacteriol	10.1128/jb.05786-11	2012
Pathogenicity	Impact of fumigants on soil microbial communities.	Ibekwe AM, Papiernik SK, Gan J, Yates SR, Yang CH, Crowley DE.	Appl Environ Microbiol	10.1128/aem.67.7.3245-3257.2001	2001
Metabolism	Humic acid-oxidizing, nitrate-reducing bacteria in agricultural soils.	Van Trump JI, Wrighton KC, Thrash JC, Weber KA, Andersen GL, Coates JD.	mBio	10.1128/mbio.00044-11	2011
	Combined use of 16S ribosomal DNA and 16S rRNA to study the bacterial community of polychlorinated biphenyl-polluted soil.	Nogales B, Moore ER, Llobet-Brossa E, Rossello-Mora R, Amann R, Timmis KN.	Appl Environ Microbiol	10.1128/aem.67.4.1874-1884.2001	2001
	13,16-Dimethyl octacosanedioic acid (iso-diabolic acid), a common membrane-spanning lipid of Acidobacteria subdivisions 1 and 3.	Damste JS, Rijpstra WI, Hopmans EC, Weijers JW, Foesel BU, Overmann J, Dedysh SN.	Appl Environ Microbiol	10.1128/aem.00466-11	2011
	Novel nickel resistance genes from the rhizosphere metagenome of plants adapted to acid mine drainage.	Mirete S, de Figueras CG, Gonzalez-Pastor JE.	Appl Environ Microbiol	10.1128/aem.00048-07	2007
Metabolism	Bacillus anthracis thioredoxin systems, characterization and role as electron donors for ribonucleotide reductase.	Gustafsson TN, Sahlin M, Lu J, Sjoberg BM, Holmgren A.	J Biol Chem	10.1074/jbc.m112.413427	2012
	Ecology of subglacial lake vostok (antarctica), based on metagenomic/metatranscriptomic analyses of accretion ice.	Rogers SO, Shtarkman YM, Kocer ZA, Edgar R, Veerapaneni R, D'Elia T.	Biology (Basel)	10.3390/biology2020629	2013
	Biological consequences of ancient gene acquisition and duplication in the large genome of Candidatus Solibacter usitatus Ellin6076.	Challacombe JF, Eichorst SA, Hauser L, Land M, Xie G, Kuske CR.	PLoS One	10.1371/journal.pone.0024882	2011
	Comparison of metagenomic samples using sequence signatures.	Jiang B, Song K, Ren J, Deng M, Sun F, Zhang X.	BMC Genomics	10.1186/1471-2164-13-730	2012
Phylogeny	A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses.	Jones RT, Robeson MS, Lauber CL, Hamady M, Knight R, Fierer N.	ISME J	10.1038/ismej.2008.127	2009
Phylogeny	Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment.	Sessitsch A, Weilharter A, Gerzabek MH, Kirchmann H, Kandeler E.	Appl Environ Microbiol	10.1128/aem.67.9.4215-4224.2001	2001
Phylogeny	Phylogenomics of the archaeal flagellum: rare horizontal gene transfer in a unique motility structure.	Desmond E, Brochier-Armanet C, Gribaldo S.	BMC Evol Biol	10.1186/1471-2148-7-106	2007
Enzymology	Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.	Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J, Barabote RD, Bradley B, Brettin TS, Brinkac LM, Bruce D, Creasy T, Daugherty SC, Davidsen TM, DeBoy RT, Detter JC, Dodson RJ, Durkin AS, Ganapathy A, Gwinn-Giglio M, Han CS, Khouri H, Kiss H, Kothari SP, Madupu R, Nelson KE, Nelson WC, Paulsen I, Penn K, Ren Q, Rosovitz MJ, Selengut JD, Shrivastava S, Sullivan SA, Tapia R, Thompson LS, Watkins KL, Yang Q, Yu C, Zafar N, Zhou L, Kuske CR.	Appl Environ Microbiol	10.1128/aem.02294-08	2009
	Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lanthipeptides.	Kloosterman AM, Cimermancic P, Elsayed SS, Du C, Hadjithomas M, Donia MS, Fischbach MA, van Wezel GP, Medema MH.	PLoS Biol	10.1371/journal.pbio.3001026	2020
Enzymology	Bacterial community structure and diversity in a century-old manure-treated agroecosystem.	Sun HY, Deng SP, Raun WR.	Appl Environ Microbiol	10.1128/aem.70.10.5868-5874.2004	2004
	Characterization of the SOS regulon of Caulobacter crescentus.	da Rocha RP, Paquola AC, Marques Mdo V, Menck CF, Galhardo RS.	J Bacteriol	10.1128/jb.01419-07	2008
Metabolism	Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: detection of a large nitrite-oxidizing population associated with Nitrospira spp.	Martiny AC, Albrechtsen HJ, Arvin E, Molin S.	Appl Environ Microbiol	10.1128/aem.71.12.8611-8617.2005	2005
	Effect of antimicrobial growth promoter administration on the intestinal microbiota of beef cattle.	Reti KL, Thomas MC, Yanke LJ, Selinger LB, Inglis GD.	Gut Pathog	10.1186/1757-4749-5-8	2013
Metabolism	Dispersal and regulation of an adaptive mutagenesis cassette in the bacteria domain.	Erill I, Campoy S, Mazon G, Barbe J.	Nucleic Acids Res	10.1093/nar/gkj412	2006
Phylogeny	Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.	Hugenholtz P, Goebel BM, Pace NR.	J Bacteriol	10.1128/jb.180.18.4765-4774.1998	1998
Enzymology	Soil microbial community structure across a thermal gradient following a geothermal heating event.	Norris TB, Wraith JM, Castenholz RW, McDermott TR.	Appl Environ Microbiol	10.1128/aem.68.12.6300-6309.2002	2002
Phylogeny	Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile.	Hansel CM, Fendorf S, Jardine PM, Francis CA.	Appl Environ Microbiol	10.1128/aem.01787-07	2008
	Systematic mapping of two component response regulators to gene targets in a model sulfate reducing bacterium.	Rajeev L, Luning EG, Dehal PS, Price MN, Arkin AP, Mukhopadhyay A.	Genome Biol	10.1186/gb-2011-12-10-r99	2011
Metabolism	Microbial diversity of a heavily polluted microbial mat and its community changes following degradation of petroleum compounds.	Abed RM, Safi NM, Koster J, de Beer D, El-Nahhal Y, Rullkotter J, Garcia-Pichel F.	Appl Environ Microbiol	10.1128/aem.68.4.1674-1683.2002	2002
	Novel bacterial lineages at the (sub)division level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms.	Derakshani M, Lukow T, Liesack W.	Appl Environ Microbiol	10.1128/aem.67.2.623-631.2001	2001
Phylogeny	Specific detection, isolation, and characterization of selected, previously uncultured members of the freshwater bacterioplankton community.	Gich F, Schubert K, Bruns A, Hoffelner H, Overmann J.	Appl Environ Microbiol	10.1128/aem.71.10.5908-5919.2005	2005
Phylogeny	Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil.	Rosch C, Mergel A, Bothe H.	Appl Environ Microbiol	10.1128/aem.68.8.3818-3829.2002	2002
Phylogeny	Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands).	Felske A, Wolterink A, Van Lis R, Akkermans AD.	Appl Environ Microbiol	10.1128/aem.64.3.871-879.1998	1998
Metabolism	Characterization of the human HSC20, an unusual DnaJ type III protein, involved in iron-sulfur cluster biogenesis.	Uhrigshardt H, Singh A, Kovtunovych G, Ghosh M, Rouault TA.	Hum Mol Genet	10.1093/hmg/ddq301	2010
Phylogeny	Bacterial populations colonizing and degrading rice straw in anoxic paddy soil.	Weber S, Stubner S, Conrad R.	Appl Environ Microbiol	10.1128/aem.67.3.1318-1327.2001	2001
	Discovery of a novel (R)-selective bacterial hydroxynitrile lyase from Acidobacterium capsulatum.	Wiedner R, Gruber-Khadjawi M, Schwab H, Steiner K	Comput Struct Biotechnol J	10.1016/j.csbj.2014.07.002	2014
Metabolism	Comparative genomic and physiological analysis provides insights into the role of Acidobacteria in organic carbon utilization in Arctic tundra soils.	Rawat SR, Mannisto MK, Bromberg Y, Haggblom MM	FEMS Microbiol Ecol	10.1111/j.1574-6941.2012.01381.x	2012
Phylogeny	Shewanella upenei sp. nov., a lipolytic bacterium isolated from bensasi goatfish Upeneus bensasi.	Kim KK, Kim YO, Park S, Kang SJ, Nam BH, Kim DN, Oh TK, Yoon JH.	J Microbiol	10.1007/s12275-011-0175-5	2011
Phylogeny	Shewanella indica sp. nov., isolated from sediment of the Arabian Sea.	Verma P, Pandey PK, Gupta AK, Kim HJ, Baik KS, Seong CN, Patole MS, Shouche YS.	Int J Syst Evol Microbiol	10.1099/ijs.0.026310-0	2011
Phylogeny	Shewanella spongiae sp. nov., isolated from a marine sponge.	Yang SH, Kwon KK, Lee HS, Kim SJ.	Int J Syst Evol Microbiol	10.1099/ijs.0.64540-0	2006
Genetics	Lactimicrobium massiliense gen. nov., sp. nov.; Anaerolactibacter massiliensis gen. nov., sp. nov.; Galactobacillus timonensis gen. nov., sp. nov. and Acidipropionibacterium timonense sp. nov. isolated from breast milk from healthy breastfeeding African women.	Togo AH, Diop A, Camara A, Kuete E, Konate S, Brevaut V, Des Robert C, Delerce J, Armstrong N, Roussel Y, Fournier PE, Thera MA, Raoult D, Million M.	New Microbes New Infect	10.1016/j.nmni.2019.100537	2019
Phylogeny	Telmatobacter bradus gen. nov., sp. nov., a cellulolytic facultative anaerobe from subdivision 1 of the Acidobacteria, and emended description of Acidobacterium capsulatum Kishimoto et al. 1991.	Pankratov TA, Kirsanova LA, Kaparullina EN, Kevbrin VV, Dedysh SN.	Int J Syst Evol Microbiol	10.1099/ijs.0.029629-0	2012
Phylogeny	Acidipila rosea gen. nov., sp. nov., an acidophilic chemoorganotrophic bacterium belonging to the phylum Acidobacteria.	Okamura K, Kawai A, Yamada T, Hiraishi A.	FEMS Microbiol Lett	10.1111/j.1574-6968.2011.02224.x	2011
Phylogeny	Acidicapsa borealis gen. nov., sp. nov. and Acidicapsa ligni sp. nov., subdivision 1 Acidobacteria from Sphagnum peat and decaying wood.	Kulichevskaya IS, Kostina LA, Valaskova V, Rijpstra WIC, Sinninghe Damste JS, de Boer W, Dedysh SN.	Int J Syst Evol Microbiol	10.1099/ijs.0.034819-0	2012
Phylogeny	Bryocella elongata gen. nov., sp. nov., a member of subdivision 1 of the Acidobacteria isolated from a methanotrophic enrichment culture, and emended description of Edaphobacter aggregans Koch et al. 2008.	Dedysh SN, Kulichevskaya IS, Serkebaeva YM, Mityaeva MA, Sorokin VV, Suzina NE, Rijpstra WIC, Sinninghe Damste JS.	Int J Syst Evol Microbiol	10.1099/ijs.0.031898-0	2012
Phylogeny	Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils.	Koch IH, Gich F, Dunfield PF, Overmann J.	Int J Syst Evol Microbiol	10.1099/ijs.0.65303-0	2008
Phylogeny	Paracidobacterium acidisoli gen. nov., sp. nov. and Alloacidobacterium dinghuense gen. nov., sp. nov., two acidobacteria isolated from forest soil, and reclassification of Acidobacterium ailaaui and Acidipila dinghuensis as Pseudacidobacterium ailaaui gen. nov., comb. nov. and Silvibacterium dinghuense comb. nov.	Zhang QM, Fu JC, Chen ZQ, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.005415	2022
Phylogeny	Isolation and characterization of Acidobacterium ailaaui sp. nov., a novel member of Acidobacteria subdivision 1, from a geothermally heated Hawaiian microbial mat.	Myers MR, King GM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001516	2016
Phylogeny	Silvibacterium bohemicum gen. nov. sp. nov., an acidobacterium isolated from coniferous soil in the Bohemian Forest National Park.	Llado S, Benada O, Cajthaml T, Baldrian P, Garcia-Fraile P	Syst Appl Microbiol	10.1016/j.syapm.2015.12.005	2015

References

#4255	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11244
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#22887	Timofey A. Pankratov, Lilia A. Kirsanova, Elena N. Kaparullina, Vadim V. Kevbrin, Svetlana N. Dedysh: Telmatobacter bradus gen. nov., sp. nov., a cellulolytic facultative anaerobe from subdivision 1 of the Acidobacteria, and emended description of Acidobacterium capsulatum Kishimoto et al. 1991. IJSEM 62: 430 - 437 2012 ( DOI 10.1099/ijs.0.029629-0 , PubMed 21460138 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acidobacterium capsulatum (DSM 11244, ATCC 51196, JCM 7670)

Name and taxonomic classification

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Cell morphology

Colony morphology

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Culture and growth conditions

Culture medium

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Physiology and metabolism

Oxygen tolerance

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Metabolite utilization

Metabolite production

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