Name: Corynebacterium uropygiale DSM 46817
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130937

Type strain:

Species: Corynebacterium uropygiale

Culture col. no.: DSM 46817, LMG 28616, ISO Iso10, ISO 10, JCM 32435

Strain history: LMG 28616 <-- M. S. Braun; Inst. of Pharm. & Mo. Biotechnol., Heidelberg Univ., Germany; Iso10.

NCBI tax ID(s): 1775911 (species)

SI-ID 396500

LMG 28616, DSM 46817, CCUG 73586

Special Collections

DSMZ
JCM

Section

When using BacDive for research please cite our paper

Corynebacterium uropygiale DSM 46817 is a mesophilic bacterium that was isolated from preen glands of healthy turkeys Meleagris gallopavo.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium uropygiale**
	Full Scientific Name (LPSN)	Corynebacterium uropygiale Braun et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	positive Confidence in %90.567
[Ref.: #125439]	Gram stain	positive Confidence in %95.2

[Ref.: #125438]	Motility	no Confidence in %92

Multimedia content

[Ref.: #22229]

Caption:

Medium 535a 37°C

[Ref.: #22229]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22229]

Culture medium

TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)

[Ref.: #22229]

Culture medium growth

[Ref.: #22229]

Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

[Ref.: #22229]

Culture medium

LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)

[Ref.: #22229]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #22229]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22229]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

anaerobe Confidence in %95.7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22229]	Sample type/isolated from	preen glands of healthy turkeys Meleagris gallopavo
[Ref.: #22229]	Host species	Meleagris gallopavo
[Ref.: #22229]	Geographic location (country and/or sea, region)	Heidelberg
[Ref.: #22229]	Country	Germany
[Ref.: #22229]	Country ISO 3 Code	DEU
[Ref.: #22229]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Preen glands of a healthy turkey (Meleagris gallopavo)
[Ref.: #67770]	Host species	Meleagris gallopavo
[Ref.: #67770]	Geographic location (country and/or sea, region)	Heidelberg
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Birds	-
#Host Body-Site	#Organ	#Skin, Nail, Hair

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT314237 (>99% sequence identity) for Corynebacterium uropygiale subclade from Microbeatlas

Aquatic Samples	162
Soil Samples	63
Animal Samples	1151
Plant Samples	45
Total Samples	1421

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22229]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22229]	Corynebacterium uropygiale strain Iso10 16S ribosomal RNA gene, partial sequence	KT314237	1399	GenBank ENA	1775911 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Corynebacterium uropygiale JCM 32435	GCA_021568315	contig	GenBank ENA	1775911 tax ID	*

[Ref.: #22229]

GC-content

60.7 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium uropygiale JCM 32435 NCBI: GCA_021568315.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	90.567	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	92.547	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	62.49	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	81.351	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.5	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	92	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium uropygiale JCM 32435 NCBI: GCA_021568315
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	63.2
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	79.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	95.2
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	anaerobe	95.7

Availability in culture collections External links

[Ref.: #22229]

Culture collection no.

DSM 46817, LMG 28616, ISO Iso10, ISO 10, JCM 32435

[Ref.: #89414]

SI-ID 396500

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium uropygiale sp. nov., isolated from the preen gland of Turkeys (Meleagris gallopavo).	Braun MS, Zimmermann S, Danner M, Rashid HO, Wink M	Syst Appl Microbiol	10.1016/j.syapm.2015.12.001	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22229

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46817

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89414

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396500.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Corynebacterium uropygiale JCM 32435

Corynebacterium uropygiale JCM 32435

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