Clostridium mucosae (DSM 100503, PG-426-IM-1, JCM 35244)

Name: Clostridium mucosae (DSM 100503, PG-426-IM-1, JCM 35244)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130930

Type strain

Strain Designation PG-426-IM-1

Culture col. no. DSM 100503 PG-426-IM-1 JCM 35244

NCBI tax ID(s) 1796627

Special Collections DSMZ Mouse DZIF

History DSMZ <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; PG-426-IM-1

Links

Clostridium mucosae PG-426-IM-1 is an anaerobe, spore-forming, rod-shaped bacterium that was isolated from ileal mucosa; TNF^deltaARE/+ C57BL/6 mouse.

spore-forming rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406611

JCM 35244,DSM 100503

@ref 20215

Last LPSN update 2026-05-29 08:37:30

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium mucosae

Full scientific name Clostridium mucosae Afrizal et al. 2025

Morphology

Cell morphology

@ref	Cell shape	Gram stain
68367	rod-shaped		from API 20A
68367		positive	from API 20A

Colony morphology

22222

Incubation period1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22222	FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)		Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Distilled water
22222	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22222	positive	growth	37

Physiology and metabolism

Oxygen tolerance

22222

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation
68367		from API 20A

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68367	17057 ChEBI	cellobiose	+	builds acid from	from API 20A
68367	17634 ChEBI	D-glucose	+	builds acid from	from API 20A
68367	16024 ChEBI	D-mannose	+	builds acid from	from API 20A
68367	65327 ChEBI	D-xylose	+	builds acid from	from API 20A
68367	5291 ChEBI	gelatin	-	hydrolysis	from API 20A
68367	30849 ChEBI	L-arabinose	+	builds acid from	from API 20A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68367	17716 ChEBI	lactose	+	builds acid from	from API 20A
68367	17306 ChEBI	maltose	+	builds acid from	from API 20A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68367	17814 ChEBI	salicin	+	builds acid from	from API 20A
68367	27082 ChEBI	trehalose	+	builds acid from	from API 20A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68367	27897 ChEBI	tryptophan	-	energy source	from API 20A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
68367	16199 ChEBI	urea	-	hydrolysis	from API 20A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A
68367	35581 ChEBI	indole		from API 20A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A
68367	35581 ChEBI	indole	-	from API 20A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	+	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68367	catalase	+	1.11.1.6	from API 20A
68367	gelatinase	-		from API 20A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A
68367	urease	-	3.5.1.5	from API 20A

API 20A

@ref	IND	URE	GLU	MAN	LAC	SAC	MAL	SAL	XYL	ARA	GEL	ESC	GLY	CEL	MNE	MLZ	RAF	SOR	RHA	TRE	CAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
22222	-	-	+	+/-	+	+/-	+	+	+	+	-	+/-	+/-	+	+	+/-	+/-	+/-	+/-	+	+	+	+	-
22222	-	-	+	+/-	+	+/-	+	+	+	+	-	+	+/-	+	+	-	+/-	+/-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.
22222	not determinedn.d.	-	+	+/-	+	+/-	+	+	+	+	-	+	+/-	+	+	+/-	+/-	+/-	+/-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
22222	-	+	+	+	-	-	-	+	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-
22222	-	-	+	+	+/-	+/-	+	+	-	+	+	-	-	-	+	-	-	+/-	-	-	-	+/-	+	-	-	-	-	-	-
22222	-	-	+	+	+	+	+	+	-	+	+	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-
22222	-	-	+	+	+	+	+	+	-	+	+	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	#Small intestine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22222	ileal mucosa; TNF^deltaARE/+ C57BL/6 mouse	Freising	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence KR364758 (>99% sequence identity) for Clostridium tertium from Microbeatlas

Aquatic Samples	386
Soil Samples	574
Animal Samples	6806
Plant Samples	46
Total Samples	7812

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM2462276v1 assembly for Clostridium sp. DSM 100503	contig	GCA_024622765	2963282.4	2963282	65.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22222	Clostridium mucosae strain PG-426-IM-1 16S ribosomal RNA gene, partial sequence	KR364758	1426		1796627

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium sp. DSM 100503 DSM 100503
NCBI: GCA_024622765.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	71.71	no
125438	anaerobic	anaerobicⓘ	yes	83.93	yes
125438	aerobic	aerobicⓘ	no	94.72	yes
125438	spore-forming	spore-formingⓘ	yes	84.05	yes
125438	thermophilic	thermophileⓘ	no	93.29	yes
125438	flagellated	motile2+ⓘ	yes	80.26	no

Literature

Title	Authors	Journal	DOI	Year
Validation List no. 221: valid publication of new names and new combinations effectively published outside the IJSEM.	Oren A, Goker M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006562	2025

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22222	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100503
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68367	Automatically annotated from API 20A .
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Clostridium mucosae (DSM 100503, PG-426-IM-1, JCM 35244)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20A

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_024622765

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media