Name: Clostridium tepidum PE
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130929

Type strain:

Species: Clostridium tepidum

Strain Designation: PE

Culture col. no.: DSM 18688

Strain history: <- F. Canganella, Univ. Tuscia, Viterbo, Italy; PE (Clostridium sporogenes biovar pennavorans) <- F. Canganella {2004}

NCBI tax ID(s): 1962263 (species)

SI-ID 402084

DSM 18688

Other strains from Clostridium tepidum

C. tepidum DSM 104389, NRRL B-65463, IEH 97212 (type strain)
C. tepidum B-CC-163-3B, DSM 29420

Section

Clostridium tepidum PE is an anaerobe, thermophilic bacterium that was isolated from solfataric muds.

anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium tepidum**
	Full Scientific Name (LPSN)	Clostridium tepidum Dobritsa et al. 2017

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22221]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #22221]

Culture medium growth

[Ref.: #22221]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22221]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22221]			growth	40 °C

[Ref.: #22221]

Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22221]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22221]	Sample type/isolated from	solfataric muds
[Ref.: #22221]	Geographic location (country and/or sea, region)	Viterbo
[Ref.: #22221]	Country	Italy
[Ref.: #22221]	Country ISO 3 Code	ITA
[Ref.: #22221]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Volcanic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM237439 (>99% sequence identity) for Clostridium from Microbeatlas

Aquatic Samples	1069
Soil Samples	1240
Animal Samples	2733
Plant Samples	286
Total Samples	5328

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22221]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22221]	Clostridium sporogenes subsp. tusciae partial 16S rRNA gene, type strain PE	AM237439	1462	ENA	378516 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium tepidum DSM 18688	GCA_002008265	contig	GenBank	1962263 tax ID	*
[Ref.: #66792]	Clostridium sp. DSM 18688 strain PE	1924269.3	wgs	PATRIC	1962263 tax ID	*
[Ref.: #66792]	Clostridium sp. DSM 18688	2882825624	draft	JGI IMG/M	1962263 tax ID	*

[Ref.: #22221]

GC-content

26.7 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridium sp. DSM 18688 strain PE PATRIC: 1924269.3
[Ref.: #69480]	motile	yes	84.08	no
[Ref.: #69480]	gram-positive	yes	93.662	no
[Ref.: #69480]	anaerobic	yes	99.361	yes
[Ref.: #69480]	aerobic	no	97.808	yes
[Ref.: #69480]	halophile	no	77.676	no
[Ref.: #69480]	spore-forming	yes	94.646	no
[Ref.: #69480]	glucose-util	yes	81.779	no
[Ref.: #69480]	flagellated	no	58.769	no
[Ref.: #69480]	thermophile	no	84.911	no
[Ref.: #69480]	glucose-ferment	yes	64.005	no

Availability in culture collections External links

[Ref.: #22221]

Culture collection no.

DSM 18688

[Ref.: #89407]

SI-ID 402084

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Clostridium tepidum sp. nov., a close relative of Clostridium sporogenes and Clostridium botulinum Group I.	Dobritsa AP, Kutumbaka KK, Werner K, Wiedmann M, Asmus A, Samadpour M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001948	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22221

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18688

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89407

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402084.1 )

* These data were automatically processed and therefore are not curated

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Clostridium sp. DSM 18688 strain PE

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