Name: Clostridioides mangenotii G10-CCK1R4-PYG-100
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130923

Type strain:

Species: Clostridioides mangenotii

Strain Designation: G10-CCK1R4-PYG-100

Culture col. no.: DSM 29133

Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; G10-CCK1R4-PYG-100

NCBI tax ID(s): 1540 (species)

SI-ID 403097

DSM 29133

Other strains from Clostridioides mangenotii

C. mangenotii A33N, DSM 1289, ATCC 25761, JCM ... (type strain)

Section

Clostridioides mangenotii G10-CCK1R4-PYG-100 is an anaerobe, mesophilic bacterium that was isolated from mouse intestine.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptostreptococcaceae*
	Genus	*Clostridioides*
	Species	**Clostridioides mangenotii**
	Full Scientific Name (LPSN)	Clostridioides mangenotii (Prévot and Zimmès-Chaverou 1947) Lawson et al. 2016

	Synonym	Clostridium mangenotii
	Synonym	"Inflabilis* mangenoti"*

Information on morphological and physiological properties Morphology

[Ref.: #22215]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22215]

Culture medium

FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)

[Ref.: #22215]

Culture medium growth

[Ref.: #22215]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22215]

Culture medium composition

expand / minimize

[Ref.: #22215]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #22215]

Culture medium growth

[Ref.: #22215]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22215]

Culture medium composition

expand / minimize

[Ref.: #22215]

Culture medium

WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)

[Ref.: #22215]

Culture medium growth

[Ref.: #22215]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22215]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22215]			growth	37 °C

[Ref.: #22215]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22215]

Oxygen tolerance

anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	+	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	+	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	+	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #22215]	13040	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22215]	Sample type/isolated from	mouse intestine
[Ref.: #22215]	Geographic location (country and/or sea, region)	Freising
[Ref.: #22215]	Country	Germany
[Ref.: #22215]	Country ISO 3 Code	DEU
[Ref.: #22215]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR364752 (>99% sequence identity) for Clostridioides mangenotii subclade from Microbeatlas

Aquatic Samples	1722
Soil Samples	5343
Animal Samples	14515
Plant Samples	1070
Total Samples	22650

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22215]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22215]	Clostridioides mangenotii strain G10-CCK1R4-PYG-100 16S ribosomal RNA gene, partial sequence	KR364752	1400	ENA	1540 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridioides mangenotii DSM 29133	GCA_024622925	contig	GenBank	1540 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clostridioides mangenotii DSM 29133 NCBI: GCA_024622925.1
[Ref.: #69480]	flagellated	no	77.789	no
[Ref.: #69480]	gram-positive	yes	89.436	no
[Ref.: #69480]	anaerobic	yes	98.912	yes
[Ref.: #69480]	aerobic	no	97.683	yes
[Ref.: #69480]	halophile	no	79.164	no
[Ref.: #69480]	spore-forming	yes	90.451	no
[Ref.: #69480]	glucose-ferment	no	55.017	no
[Ref.: #69480]	thermophile	no	99.715	no
[Ref.: #69480]	glucose-util	yes	82.034	no
[Ref.: #69480]	motile	yes	67.431	no

Availability in culture collections External links

[Ref.: #22215]

Culture collection no.

DSM 29133

[Ref.: #89403]

SI-ID 403097

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22215

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29133

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89403

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403097.1 )

* These data were automatically processed and therefore are not curated

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Clostridioides mangenotii DSM 29133

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