Pseudomonas lurida (DSM 15835, CIP 109623, LMG 21995)

Name: Pseudomonas lurida (DSM 15835, CIP 109623, LMG 21995)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13092

Type strain

Strain Designation P 513/18, P513/18

Culture col. no. DSM 15835 CIP 109623 LMG 21995 P 513/18 P513/18

NCBI tax ID(s) 244566

Special Collections DSMZ CIP Literature strains

History <- U. Behrendt, ZALF Müncheberg; P 513/18 CIP <- 2007, DSMZ <- U. Behrendt, ZALF, Müncheberg, Germany: strain P513/18

Links

Pseudomonas lurida P 513/18 is an obligate aerobe, Gram-negative, motile bacterium that was isolated from phyllosphere of grasses.

Gram-negative motile rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 101141

LMG 21995,DSM 15835,CCUG 54630,CIP 109623,CFBP 7181

@ref 20215

Last LPSN update 2026-02-09 11:21:02

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas lurida

Full scientific name Pseudomonas lurida Behrendt et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
32005	negative	rod-shaped
120677	negative	rod-shaped
125438			92.135
125438	negative		99
125439	negative		90.9

Pigmentation

32005

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6048	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)	Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
37793	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120677	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6048	positive	growth	28
32005	positive	optimum	21
37793	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
120677	obligate aerobe
125438	aerobe	94.237

Spore formation

@ref	Spore formation	Confidence
32005
125439		96.1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32005	28644 ChEBI	2-oxopentanoate	+	carbon source
32005	18240 ChEBI	4-hydroxy-L-proline	+	carbon source
32005	30089 ChEBI	acetate	+	carbon source
32005	16449 ChEBI	alanine	+	carbon source
32005	22599 ChEBI	arabinose	+	carbon source
32005	22653 ChEBI	asparagine	+	carbon source
32005	35391 ChEBI	aspartate	+	carbon source
32005	16947 ChEBI	citrate	+	carbon source
32005	16000 ChEBI	ethanolamine	+	carbon source
32005	15740 ChEBI	formate	+	carbon source
32005	28757 ChEBI	fructose	+	carbon source
32005	28260 ChEBI	galactose	+	carbon source
32005	24175 ChEBI	galacturonate	+	carbon source
32005	5291 ChEBI	gelatin	+	carbon source
32005	24265 ChEBI	gluconate	+	carbon source
32005	17234 ChEBI	glucose	+	carbon source
32005	32323 ChEBI	glucuronamide	+	carbon source
32005	29987 ChEBI	glutamate	+	carbon source
32005	17754 ChEBI	glycerol	+	carbon source
32005	27570 ChEBI	histidine	+	carbon source
32005	17596 ChEBI	inosine	+	carbon source
32005	17240 ChEBI	itaconate	+	carbon source
32005	21217 ChEBI	L-alaninamide	+	carbon source
32005	18403 ChEBI	L-arabitol	+	carbon source
32005	24996 ChEBI	lactate	+	carbon source
32005	25017 ChEBI	leucine	+	carbon source
32005	15792 ChEBI	malonate	+	carbon source
32005	29864 ChEBI	mannitol	+	carbon source
32005	37684 ChEBI	mannose	+	carbon source
32005	51850 ChEBI	methyl pyruvate	+	carbon source
32005	17268 ChEBI	myo-inositol	+	carbon source
32005	506227 ChEBI	N-acetylglucosamine	+	carbon source
120677	17632 ChEBI	nitrate	-	reduction
120677	16301 ChEBI	nitrite	-	reduction
32005	18257 ChEBI	ornithine	+	carbon source
32005	26271 ChEBI	proline	+	carbon source
32005	17272 ChEBI	propionate	+	carbon source
32005	17148 ChEBI	putrescine	+	carbon source
32005	26546 ChEBI	rhamnose	+	carbon source
32005	15963 ChEBI	ribitol	+	carbon source
32005	17822 ChEBI	serine	+	carbon source
32005	30911 ChEBI	sorbitol	+	carbon source
32005	30031 ChEBI	succinate	+	carbon source
32005	26986 ChEBI	threonine	+	carbon source
32005	27082 ChEBI	trehalose	+	carbon source
32005	53425 ChEBI	tween 60	+	carbon source
32005	27248 ChEBI	urocanic acid	+	carbon source
32005	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120677	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32005	catalase	+	1.11.1.6
120677	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
32005	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
32005	gelatinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120677	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
120677	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120677	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6048	phyllosphere of grasses	Paulinenaue	Germany	DEU	Europe
120677	Phyllosphere of grasses	Paulinenaue	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ581999 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	976
Soil Samples	555
Animal Samples	2173
Plant Samples	1759
Total Samples	5463

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6048	1	Risk group (German classification) According to TRBA 466
120677	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM256389v1 assembly for Pseudomonas lurida LMG 21995	contig	GCA_002563895	244566.18	2616644927	244566	78.94

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6048	Pseudomonas lurida partial 16S rRNA gene, type strain DSM 15835T	AJ581999	1529		244566

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas lurida LMG 21995
NCBI: GCA_002563895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.10	no
125439	motility	BacteriaNetⓘ	yes	77.50	no
125439	gram_stain	BacteriaNetⓘ	negative	90.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	86.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas lurida strain LMG 21995
PATRIC: 244566.18

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	yes
125438	anaerobic	anaerobicⓘ	no	98.90	yes
125438	spore-forming	spore-formingⓘ	no	88.42	yes
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	aerobic	aerobicⓘ	yes	94.24	yes
125438	flagellated	motile2+ⓘ	yes	92.14	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Prevalence and characterization of Ice Nucleation Active (INA) bacteria from rainwater in Indonesia.	Khosasih V, Prasetyo N, Sudianto E, Waturangi DE.	BMC Microbiol	10.1186/s12866-022-02521-1	2022
Phenotype	A native plant growth promoting bacterium, Bacillus sp. B55, rescues growth performance of an ethylene-insensitive plant genotype in nature.	Meldau DG, Long HH, Baldwin IT.	Front Plant Sci	10.3389/fpls.2012.00112	2012
	Isolation of cadmium-resistance and siderophore-producing endophytic bacteria and their potential use for soil cadmium remediation.	Li Y, Wei S, Chen X, Dong Y, Zeng M, Yan C, Hou L, Jiao R.	Heliyon	10.1016/j.heliyon.2023.e17661	2023
	Potential Biocontrol Activities of Populus Endophytes against Several Plant Pathogens Using Different Inhibitory Mechanisms.	Doty SL, Joubert PM, Firrincieli A, Sher AW, Tournay R, Kill C, Parikh SS, Okubara P.	Pathogens	10.3390/pathogens12010013	2022
Genetics	Agronomic efficiency and genome mining analysis of the wheat-biostimulant rhizospheric bacterium Pseudomonas pergaminensis sp. nov. strain 1008^T.	Diaz M, Bach T, Gonzalez Anta G, Agaras B, Wibberg D, Noguera F, Canciani W, Valverde C.	Front Plant Sci	10.3389/fpls.2022.894985	2022
Phylogeny	Pseudomonas lurida sp. nov., a fluorescent species associated with the phyllosphere of grasses.	Behrendt U, Ulrich A, Schumann P, Meyer JM, Sproer C	Int J Syst Evol Microbiol	10.1099/ijs.0.64793-0	2007

References

#6048	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15835
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28259	IJSEM 979 2007 ( DOI 10.1099/ijs.0.64793-0 , PubMed 17473245 )
#32005	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28259
#37793	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120677	Collection of Institut Pasteur ; Curators of the CIP; CIP 109623
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas lurida (DSM 15835, CIP 109623, LMG 21995)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002563895

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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