Name: Vogesella alkaliphila JC141
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130824

Type strain:

Species: Vogesella alkaliphila

Strain Designation: JC141

Culture col. no.: DSM 100317, KCTC 32041, LMG 27066

Strain history: <- LMG <- C. Sasikala <- S. Yadav, Jawaharlal Nehru Technological Univ., Hyderabad, India

NCBI tax ID(s): 1193621 (species)

SI-ID 380527

LMG 27066, KCTC 32041

Section

Vogesella alkaliphila JC141 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from alkaline soil .

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Chromobacteriaceae*
	Genus	*Vogesella*
	Species	**Vogesella alkaliphila**
	Full Scientific Name (LPSN)	Vogesella alkaliphila Subhash et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30866]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #30866]	Cell length	3 µm

[Ref.: #30866]	Cell width	0.55 µm

[Ref.: #30866]	Cell shape	rod-shaped

[Ref.: #30866]	Motility	no

[Ref.: #30866]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30866]			growth	25-40 °C
[Ref.: #30866]			optimum	30 °C

[Ref.: #30866]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #30866]			optimum	8
[Ref.: #30866]			growth	6.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30866]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30866]		NaCl		growth	0-0.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30866]	acetate ChEBI	+	carbon source
[Ref.: #30866]	alanine ChEBI	+	carbon source
[Ref.: #30866]	cellobiose ChEBI	+	carbon source
[Ref.: #30866]	citrate ChEBI	+	carbon source
[Ref.: #30866]	formate ChEBI	+	carbon source
[Ref.: #30866]	fructose ChEBI	+	carbon source
[Ref.: #30866]	gluconate ChEBI	+	carbon source
[Ref.: #30866]	glucose ChEBI	+	carbon source
[Ref.: #30866]	glycerol ChEBI	+	carbon source
[Ref.: #30866]	maltose ChEBI	+	carbon source
[Ref.: #30866]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30866]	myo-inositol ChEBI	+	carbon source
[Ref.: #30866]	succinate ChEBI	+	carbon source
[Ref.: #30866]	sucrose ChEBI	+	carbon source
[Ref.: #30866]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #30866]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #30866]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30866]		catalase	+	1.11.1.6
[Ref.: #30866]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21865]	Sample type/isolated from	alkaline soil (pH 8.8)
[Ref.: #21865]	Geographic location (country and/or sea, region)	Uttar Pradesh, Mau
[Ref.: #21865]	Country	India
[Ref.: #21865]	Country ISO 3 Code	IND
[Ref.: #21865]	Continent	Asia
[Ref.: #21865]	Geographic location	26.1289°/83.5333°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Alkaline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HE819389 (>99% sequence identity) for Vogesella from Microbeatlas

Aquatic Samples	987
Soil Samples	455
Animal Samples	145
Plant Samples	82
Total Samples	1669

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21865]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21865]	Vogesella alkaliphila partial 16S rRNA gene, type strain JC141T, isolate B4	HE819389	1362	ENA	1193621 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vogesella alkaliphila KCTC 32041	GCA_014652475	scaffold	GenBank	1193621 tax ID	*
[Ref.: #66792]	Vogesella alkaliphila strain KCTC 32041	1193621.3	wgs	PATRIC	1193621 tax ID	*

[Ref.: #30866]

GC-content

62.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Vogesella alkaliphila KCTC 32041 NCBI: GCA_014652475.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vogesella alkaliphila KCTC 32041 NCBI: GCA_014652475.1
[Ref.: #69480]	flagellated	yes	89.116	no
[Ref.: #69480]	gram-positive	no	98.498	yes
[Ref.: #69480]	anaerobic	no	98.27	yes
[Ref.: #69480]	aerobic	yes	88.228	yes
[Ref.: #69480]	halophile	no	94.322	no
[Ref.: #69480]	spore-forming	no	95.375	no
[Ref.: #69480]	thermophile	no	98.139	yes
[Ref.: #69480]	glucose-util	yes	89.312	no
[Ref.: #69480]	motile	yes	90.588	yes
[Ref.: #69480]	glucose-ferment	no	86.631	no

Availability in culture collections External links

[Ref.: #21865]

Culture collection no.

DSM 100317, KCTC 32041, LMG 27066

[Ref.: #89311]

SI-ID 380527

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vogesella alkaliphila sp. nov., isolated from an alkaline soil, and emended description of the genus Vogesella.	Subhash Y, Tushar L, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.046300-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21865

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100317

#30866

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27196 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89311

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID380527.1 )

#27196

IJSEM 2338 2013 ( DOI 10.1099/ijs.0.046300-0 , PubMed 23178725 )

* These data were automatically processed and therefore are not curated

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Vogesella alkaliphila KCTC 32041

Vogesella alkaliphila KCTC 32041

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