Name: Prauserella coralliicola SP28S-3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130800

Type strain:

Species: Prauserella coralliicola

Strain Designation: SP28S-3

Culture col. no.: DSM 46655, CGMCC 4.7182, JCM 33043

Strain history: CGMCC 4.7182 <-- J.-M. Liu et al.; Inst. of Med. Biotechnol., Chin. Acad. of Med. Sci., China; SP28S-3.

NCBI tax ID(s): 1592324 (species)

Special Collections

Other strains from Prauserella coralliicola

Section

Prauserella coralliicola SP28S-3 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from surface-sterilized healthy stem of Tamarix taklamakanensis.

spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Prauserella*
	Species	**Prauserella coralliicola**
	Full Scientific Name (LPSN)	Prauserella coralliicola Wu et al. 2014

Synonym

Prauserella endophytica

Information on morphological and physiological properties Morphology

[Ref.: #69458]	Colony color	Colourless
[Ref.: #69458]	Cultivation medium used	ISP 2

[Ref.: #69458]	Colony color	Colourless
[Ref.: #69458]	Cultivation medium used	ISP 6

[Ref.: #69458]	Colony color	Ivory (1014)
[Ref.: #69458]	Cultivation medium used	suter with tyrosine

[Ref.: #69458]	Colony color	Ivory (1014)
[Ref.: #69458]	Cultivation medium used	suter without tyrosine

[Ref.: #69458]	Colony color	Light ivory (1015)
[Ref.: #69458]	Cultivation medium used	ISP 3

[Ref.: #69458]	Colony color	Light ivory (1015)
[Ref.: #69458]	Cultivation medium used	ISP 4

[Ref.: #69458]	Colony color	Light ivory (1015)
[Ref.: #69458]	Cultivation medium used	ISP 5

[Ref.: #69458]	Colony color	Light ivory (1015)
[Ref.: #69458]	Cultivation medium used	ISP 7

[Ref.: #69458]	Pigment production	no
[Ref.: #69458]	Pigment name	Melanin
[Ref.: #69458]	Pigment production	yes
[Ref.: #69458]	Pigmentation color	Sand yellow (1002)
[Ref.: #69458]	Pigment name	soluble pigment

[Ref.: #69458]	Multicellular complex forming ability	no
[Ref.: #69458]	Multicellular complex name	Aerial mycelium
[Ref.: #69458]	Medium Name (multicellularity)	ISP 2

[Ref.: #69458]	Multicellular complex forming ability	yes
[Ref.: #69458]	Multicellular complex name	Aerial mycelium
[Ref.: #69458]	Multicellular complex color	Ivory (1014)
[Ref.: #69458]	Medium Name (multicellularity)	ISP 3

[Ref.: #69458]	Multicellular complex forming ability	no
[Ref.: #69458]	Multicellular complex name	Aerial mycelium
[Ref.: #69458]	Medium Name (multicellularity)	ISP 4

[Ref.: #69458]	Multicellular complex forming ability	no
[Ref.: #69458]	Multicellular complex name	Aerial mycelium
[Ref.: #69458]	Medium Name (multicellularity)	ISP 5

[Ref.: #69458]	Multicellular complex forming ability	no
[Ref.: #69458]	Multicellular complex name	Aerial mycelium
[Ref.: #69458]	Medium Name (multicellularity)	ISP 6

[Ref.: #69458]	Multicellular complex forming ability	no
[Ref.: #69458]	Multicellular complex name	Aerial mycelium
[Ref.: #69458]	Medium Name (multicellularity)	ISP 7

[Ref.: #69458]	Multicellular complex forming ability	no
[Ref.: #69458]	Multicellular complex name	Aerial mycelium
[Ref.: #69458]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69458]	Multicellular complex forming ability	no
[Ref.: #69458]	Multicellular complex name	Aerial mycelium
[Ref.: #69458]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #21859]

Caption:

Medium 535 28°C

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Intellectual property rights:

[Ref.: #69458]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69458]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69458]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69458]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #21859]

Culture medium growth

[Ref.: #21859]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21859]

Culture medium composition

expand / minimize

[Ref.: #21859]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #21859]

Culture medium growth

[Ref.: #21859]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21859]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21859]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %91.486

[Ref.: #69481]

Ability of spore formation

yes Confidence in %99

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69458]		NaCl		growth	0-5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-8(H₄), MK-10(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69458]	arabinose ChEBI	+/-	growth
[Ref.: #69458]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69458]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69458]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69458]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69458]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69458]	raffinose ChEBI	-	growth
[Ref.: #69458]	rhamnose ChEBI	+	growth
[Ref.: #69458]	sucrose ChEBI	+/-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69458]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69458]	3951	-	-	+	+	-	-	+	+	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69458]	6135	not determinedn.d.	+	+/-	+/-	-	+	+	+/-	-	+/-	+	+	-	-	-	+	+/-	+	-	+/-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21859]	Sample type/isolated from	surface-sterilized healthy stem of Tamarix taklamakanensis
[Ref.: #21859]	Host species	Tamarix taklamakanensis
[Ref.: #21859]	Geographic location (country and/or sea, region)	Xinjiang, Taklarmakan desert
[Ref.: #21859]	Country	China
[Ref.: #21859]	Country ISO 3 Code	CHN
[Ref.: #21859]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Surface-sterilized stem of Tamarix taklamakanensis collected from the southern edge of Taklamakan desert
[Ref.: #67770]	Host species	Tamarix taklamakanensis
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Stem (Branch)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KM670438 (>99% sequence identity) for Prauserella from Microbeatlas

Aquatic Samples	10
Soil Samples	205
Animal Samples	91
Plant Samples	20
Total Samples	326

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21859]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21859]	Prauserella endophytica strain SP28S-3 16S ribosomal RNA gene, partial sequence	KM670438	1484	GenBank ENA	1592324 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Prauserella endophytica CGMCC 4.7182	GCA_005146945	scaffold	GenBank ENA	1592324 tax ID
[Ref.: #66792]	Prauserella endophytica strain CGMCC 4.7182	1592324.3	wgs	PATRIC	1592324 tax ID	*
[Ref.: #66792]	Prauserella endophytica CGMCC 4.7182	2894502394	draft	JGI IMG/M	1592324 tax ID	*

[Ref.: #21859]	GC-content	69.7 mol%
[Ref.: #67770]	GC-content	69.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Prauserella endophytica CGMCC 4.7182 NCBI: GCA_005146945.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Prauserella endophytica strain CGMCC 4.7182 PATRIC: 1592324.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.403	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.149	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	79.589	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.486	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.875	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.5	no

Availability in culture collections External links

[Ref.: #21859]

Culture collection no.

DSM 46655, CGMCC 4.7182, JCM 33043

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Prauserella flavalba sp. nov., a novel species of the genus Prauserella, isolated from alkaline soil.	Li Q, Ruckert C, Li G, Huang P, Schneider O, Kalinowski J, Jiang Y, Zotchev SB, Jiang C	Int J Syst Evol Microbiol	10.1099/ijsem.0.003768	2020	*
Phylogeny	Prauserella oleivorans sp. nov., a halophilic and thermotolerant crude-oil-degrading actinobacterium isolated from an oil-contaminated mud pit.	Dastgheib SMM, Tirandaz H, Moshtaghi Nikou M, Ramezani M, Shavandi M, Amoozegar MA, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002124	2017	*
Phylogeny	Prauserella endophytica sp. nov., an endophytic actinobacterium isolated from Tamarix taklamakanensis.	Liu JM, Habden X, Guo L, Tuo L, Jiang ZK, Liu SW, Liu XF, Chen L, Li RF, Zhang YQ, Sun CH	Antonie Van Leeuwenhoek	10.1007/s10482-015-0435-1	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21859

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46655

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69458

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Prauserella endophytica CGMCC 4.7182

Prauserella endophytica strain CGMCC 4.7182

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