Baia soyae (DSM 46831, CGMCC 4.7223, NEAU-gxj18)

Name: Baia soyae (DSM 46831, CGMCC 4.7223, NEAU-gxj18)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130798

Type strain

Strain Designation NEAU-gxj18

Culture col. no. DSM 46831 CGMCC 4.7223 NEAU-gxj18

NCBI tax ID(s) 1544746

Special Collections DSMZ

History DSMZ <- C. Liu, School of Life Science, Harbin,China; NEAU-gxj18 <- X. Guan

Links

Baia soyae NEAU-gxj18 is a bacterium that was isolated from surface sterilized soybean root [Glycine max Merr].

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 407713

DSM 46831

@ref 20215

Last LPSN update 2026-05-29 08:37:28

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Thermoactinomycetaceae

Genus Baia

Species Baia soyae

Full scientific name Baia soyae Guan et al. 2015

Morphology

Multimedia

@ref:	21857
multimedia content:	DSM_46831.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46831.jpg
caption:	Medium 535a 37°C
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21857	TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
21857	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
21857	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	93.039

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
21857	surface sterilized soybean root [Glycine max (L.) Merr]	Harbin, Heilongjiang Province (45° 54' N 126° 52' E)	China	CHN	Asia	45.9	126.867 45.9/126.867

Taxonmaps

69479

Global distribution of 16S sequence KM359702 (>99% sequence identity) for Thermoactinomycetaceae from Microbeatlas

Aquatic Samples	962
Soil Samples	3183
Animal Samples	711
Plant Samples	893
Total Samples	5749

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21857	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM434144v1 assembly for Baia soyae DSM 46831	contig	GCA_004341445	1544746.3	2795386142	1544746	47.65

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21857	Baia soyae strain NEAU-gxj18 16S ribosomal RNA gene, partial sequence	KM359702	1499		1544746

GC content

@ref	GC-content (mol%)	Method
21857	49.9	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM434144v1 assembly for Baia soyae DSM 46831
BV-BRC: 1544746.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	93.04	no
125439	motility	BacteriaNetⓘ	no	76.36	no
125439	gram_stain	BacteriaNetⓘ	positive	64.63	no
125439	spore_formation	BacteriaNetⓘ	yes	37.34	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Baia soyae strain DSM 46831
PATRIC: 1544746.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	78.92	no
125438	anaerobic	anaerobicⓘ	no	92.81	no
125438	spore-forming	spore-formingⓘ	yes	80.78	no
125438	aerobic	aerobicⓘ	yes	76.11	no
125438	thermophilic	thermophileⓘ	no	74.87	no
125438	flagellated	motile2+ⓘ	no	72.16	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Baia soyae gen. nov., sp. nov., a mesophilic representative of the family Thermoactinomycetaceae, isolated from soybean root [Glycine max (L.) Merr].	Guan X, Liu C, Fang B, Zhao J, Jin P, Li J, Jia F, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.000485	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21857	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46831
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Baia soyae (DSM 46831, CGMCC 4.7223, NEAU-gxj18)

Name and taxonomic classification

Morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004341445

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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