Name: Baia soyae NEAU-gxj18
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130798

Type strain:

Species: Baia soyae

Strain Designation: NEAU-gxj18

Culture col. no.: DSM 46831, CGMCC 4.7223

Strain history: <- C. Liu, School of Life Science, Harbin,China; NEAU-gxj18 <- X. Guan

NCBI tax ID(s): 1544746 (species)

SI-ID 407713

DSM 46831

Section

Baia soyae NEAU-gxj18 is a spore-forming, Gram-positive bacterium that was isolated from surface sterilized soybean root [Glycine max Merr].

Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Thermoactinomycetaceae*
	Genus	*Baia*
	Species	**Baia soyae**
	Full Scientific Name (LPSN)	Baia soyae Guan et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %99
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21857]	Sample type/isolated from	surface sterilized soybean root [Glycine max (L.) Merr]
[Ref.: #21857]	Geographic location (country and/or sea, region)	Harbin, Heilongjiang Province (45° 54' N 126° 52' E)
[Ref.: #21857]	Country	China
[Ref.: #21857]	Country ISO 3 Code	CHN
[Ref.: #21857]	Continent	Asia
[Ref.: #21857]	Geographic location	45.9000°/126.8670°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KM359702 (>99% sequence identity) for Thermoactinomycetaceae from Microbeatlas

Aquatic Samples	962
Soil Samples	3183
Animal Samples	711
Plant Samples	893
Total Samples	5749

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21857]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21857]	Baia soyae strain NEAU-gxj18 16S ribosomal RNA gene, partial sequence	KM359702	1499	ENA	1544746 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Baia soyae DSM 46831	GCA_004341445	contig	GenBank	1544746 tax ID	*
[Ref.: #66792]	Baia soyae strain DSM 46831	1544746.3	wgs	PATRIC	1544746 tax ID	*
[Ref.: #66792]	Baia soyae DSM 46831	2795386142	draft	JGI IMG/M	1544746 tax ID	*

[Ref.: #21857]

GC-content

49.9 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Baia soyae strain DSM 46831 PATRIC: 1544746.3
[Ref.: #69481]	spore-forming	yes	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Baia soyae strain DSM 46831 PATRIC: 1544746.3
[Ref.: #69480]	motile	no	86.892	no
[Ref.: #69480]	gram-positive	yes	89.116	no
[Ref.: #69480]	anaerobic	no	98.65	no
[Ref.: #69480]	aerobic	yes	89.41	no
[Ref.: #69480]	halophile	no	89.556	no
[Ref.: #69480]	spore-forming	yes	88.655	no
[Ref.: #69480]	thermophile	no	53.187	no
[Ref.: #69480]	glucose-util	yes	90.898	no
[Ref.: #69480]	flagellated	no	96.028	no
[Ref.: #69480]	glucose-ferment	no	90.335	no

Availability in culture collections External links

[Ref.: #21857]

Culture collection no.

DSM 46831, CGMCC 4.7223

[Ref.: #89287]

SI-ID 407713

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Baia soyae gen. nov., sp. nov., a mesophilic representative of the family Thermoactinomycetaceae, isolated from soybean root [Glycine max (L.) Merr].	Guan X, Liu C, Fang B, Zhao J, Jin P, Li J, Jia F, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.000485	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21857

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46831

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89287

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407713.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Baia soyae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Baia soyae strain DSM 46831

Baia soyae strain DSM 46831

Change proposal

Change proposal