Name: Aetherobacter rufus SBSr003
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130794

Type strain:

Species: Aetherobacter rufus

Strain Designation: SBSr003

Culture col. no.: DSM 24628, NCCB 100378

Strain history: <- M. Stadler, InterMed Discovery GmbH; SBSr003 <- R. Garcia, Univ. Saarland, Germany

NCBI tax ID(s): 888831 (species)

SI-ID 407149

DSM 24628

Section

Aetherobacter rufus SBSr003 is an aerobe, psychrophilic, Gram-negative bacterium that forms circular colonies and was isolated from dried soil with decaying plant material.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Polyangiaceae*
	Genus	*Aetherobacter*
	Species	**Aetherobacter rufus**
	Full Scientific Name (LPSN)	Aetherobacter rufus Garcia et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43768]	Gram stain	negative

[Ref.: #43768]	Cell length	3-6 µm

[Ref.: #43768]	Cell width	1-1.2 µm

[Ref.: #43768]	Cell shape	rod-shaped

[Ref.: #43768]	Motility	yes

[Ref.: #43768]	Flagellum arrangement	gliding

[Ref.: #43768]	Colony color	Whitish, centre transparent
[Ref.: #43768]	Colony shape	circular
[Ref.: #43768]	Cultivation medium used	Yeast agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43768]

Culture medium

Yeast agar

[Ref.: #43768]

Culture medium growth

[Ref.: #21853]

Culture medium

M1DG-MEDIUM (DSMZ Medium 1296)

[Ref.: #21853]

Culture medium growth

[Ref.: #21853]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21853]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #21853]		growth	28 °C
[Ref.: #43768]		optimum	22-23 °C
[Ref.: #43768]	no	growth	26 °C
[Ref.: #43768]	no	growth	37 °C

[Ref.: #21853]	Temperature range	mesophilic
[Ref.: #43768]	Temperature range	psychrophilic
[Ref.: #43768]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43768]			optimum	6-7
[Ref.: #43768]			growth	5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43768]

Oxygen tolerance

aerobe

[Ref.: #21853]

Name of produced compound

aetheramide A and B

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43768]		NaCl		growth	0-0.2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43768]	arabinose ChEBI	+	growth
[Ref.: #43768]	casein	+	hydrolysis
[Ref.: #43768]	cellobiose ChEBI	+	growth
[Ref.: #43768]	cellulose ChEBI	-	degradation
[Ref.: #43768]	chitin ChEBI	-	degradation
[Ref.: #43768]	esculin ChEBI	+	hydrolysis
[Ref.: #43768]	fructose ChEBI	+	growth
[Ref.: #43768]	galactose ChEBI	+	growth
[Ref.: #43768]	glucose ChEBI	+	growth
[Ref.: #43768]	lactose ChEBI	+	growth
[Ref.: #43768]	maltose ChEBI	+	growth
[Ref.: #43768]	mannose ChEBI	+	growth
[Ref.: #43768]	skimmed milk	+	hydrolysis
[Ref.: #43768]	sorbitol ChEBI	+	growth
[Ref.: #43768]	starch ChEBI	+	growth
[Ref.: #43768]	starch ChEBI	+	hydrolysis
[Ref.: #43768]	sucrose ChEBI	+	growth
[Ref.: #43768]	tryptone	+	growth
[Ref.: #43768]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43768]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43768]	xylan ChEBI	+	hydrolysis
[Ref.: #43768]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance
[Ref.: #43768]	ampicillin ChEBI				yes
[Ref.: #43768]	apramycin ChEBI				yes
[Ref.: #43768]	bacitracin ChEBI	yes	50	µg/mL
[Ref.: #43768]	carbenicillin ChEBI	yes
[Ref.: #43768]	cephalothin ChEBI	yes	50	µg/mL
[Ref.: #43768]	fusidate ChEBI	yes
[Ref.: #43768]	gentamicin ChEBI				yes
[Ref.: #43768]	hygromycin ChEBI	yes	50	µg/mL
[Ref.: #43768]	kanamycin ChEBI	yes
[Ref.: #43768]	neomycin ChEBI	yes	50	µg/mL
[Ref.: #43768]	oxytetracycline ChEBI	yes
[Ref.: #43768]	polymyxin ChEBI	yes	50	µg/mL
[Ref.: #43768]	rifampicin ChEBI	yes
[Ref.: #43768]	spectinomycin ChEBI	yes
[Ref.: #43768]	streptomycin ChEBI	yes	50	µg/mL
[Ref.: #43768]	tetracycline ChEBI	yes
[Ref.: #43768]	thiostrepton ChEBI	yes
[Ref.: #43768]	tobramycin ChEBI	yes	50	µg/mL
[Ref.: #43768]	trimethoprim ChEBI	yes	50	µg/mL
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43768]	acid phosphatase	+	3.1.3.2
[Ref.: #43768]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43768]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43768]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43768]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43768]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43768]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43768]	beta-galactosidase	+	3.2.1.23
[Ref.: #43768]	beta-glucosidase	-	3.2.1.21
[Ref.: #43768]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43768]	cystine arylamidase	+	3.4.11.3
[Ref.: #43768]	esterase (C 4)	+
[Ref.: #43768]	esterase Lipase (C 8)	+
[Ref.: #43768]	leucine arylamidase	+	3.4.11.1
[Ref.: #43768]	lipase (C 14)	+/-
[Ref.: #43768]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43768]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43768]	trypsin	-	3.4.21.4
[Ref.: #43768]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21853]	Sample type/isolated from	dried soil with decaying plant material

[Ref.: #43768]	Sample type/isolated from	Dried soil from the Saarland Centre for Biodocumentation
[Ref.: #43768]	Geographic location (country and/or sea, region)	Landsweiler-Reden, Saarland
[Ref.: #43768]	Country	Germany
[Ref.: #43768]	Country ISO 3 Code	DEU
[Ref.: #43768]	Continent	Europe
[Ref.: #43768]	Isolation date	2007
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Decomposing plant
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU249610 (>99% sequence identity) for Aetherobacter rufus from Microbeatlas

Aquatic Samples	193
Soil Samples	1248
Animal Samples	112
Plant Samples	121
Total Samples	1674

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21853]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21853]	Aetherobacter rufus strain SBSr003 16S ribosomal RNA gene, complete sequence	GU249610	1551	ENA	888831 tax ID

[Ref.: #43768]	GC-content	68 mol%	high performance liquid chromatography (HPLC)
[Ref.: #21853]	GC-content	68.0 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #21853]

Culture collection no.

DSM 24628, NCCB 100378

[Ref.: #89285]

SI-ID 407149

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aetherobacter fasciculatus gen. nov., sp. nov. and Aetherobacter rufus sp. nov., novel myxobacteria with promising biotechnological applications.	Garcia R, Stadler M, Gemperlein K, Muller R	Int J Syst Evol Microbiol	10.1099/ijsem.0.000813	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21853

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24628

#43768

Ronald Garcia, Marc Stadler, Katja Gemperlein and Rolf Müller: Aetherobacter fasciculatus gen. nov., sp. nov. and Aetherobacter rufus sp. nov., novel myxobacteria with promising biotechnological applications. IJSEM 66: 928 - 938 2016 ( DOI 10.1099/ijsem.0.000813 , PubMed 26637815 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89285

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407149.1 )

* These data were automatically processed and therefore are not curated

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