Name: Pseudoxanthomonas jiangsuensis wax
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130779

Type strain:

Species: Pseudoxanthomonas jiangsuensis

Strain Designation: wax

Culture col. no.: DSM 22398, CGMCC 1.10137

Strain history: <- G. Wang, Nanjing Agric. Univ., China; wax

NCBI tax ID(s): 1871049 (species)

SI-ID 407313

DSM 22398

Section

Pseudoxanthomonas jiangsuensis wax is a mesophilic, motile bacterium that was isolated from soil contaminated with pesticides.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Pseudoxanthomonas*
	Species	"Pseudoxanthomonas jiangsuensis"
	Full Scientific Name (LPSN)	Pseudoxanthomonas jiangsuensis Wang et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #69480]	Motility	yes Confidence in %91.294

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21739]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #21739]

Culture medium growth

[Ref.: #21739]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21739]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21739]			growth	30 °C

[Ref.: #21739]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.989

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21739]	Sample type/isolated from	soil contaminated with pesticides
[Ref.: #21739]	Geographic location (country and/or sea, region)	Yangzhou province
[Ref.: #21739]	Country	China
[Ref.: #21739]	Country ISO 3 Code	CHN
[Ref.: #21739]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ796079 (>99% sequence identity) for Pseudoxanthomonas from Microbeatlas

Aquatic Samples	33
Soil Samples	183
Animal Samples	15
Plant Samples	10
Total Samples	241

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21739]	Pseudoxanthomonas jiangsuensis strain wax 16S ribosomal RNA gene, partial sequence	FJ796079	1503	ENA	619688 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoxanthomonas jiangsuensis DSM 22398	GCA_010093185	contig	GenBank	619688 tax ID	*
[Ref.: #66792]	Pseudoxanthomonas jiangsuensis strain DSM 22398	619688.3	wgs	PATRIC	619688 tax ID	*
[Ref.: #66792]	Pseudoxanthomonas jiangsuensis DSM 22398	2895495289	draft	JGI IMG/M	619688 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoxanthomonas jiangsuensis strain DSM 22398 PATRIC: 619688.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoxanthomonas jiangsuensis strain DSM 22398 PATRIC: 619688.3
[Ref.: #69480]	gram-positive	no	98.871	no
[Ref.: #69480]	anaerobic	no	98.833	no
[Ref.: #69480]	halophile	no	96.364	no
[Ref.: #69480]	spore-forming	no	95.633	no
[Ref.: #69480]	glucose-util	yes	91.24	no
[Ref.: #69480]	thermophile	no	98.173	yes
[Ref.: #69480]	flagellated	no	83.046	no
[Ref.: #69480]	aerobic	yes	88.504	no
[Ref.: #69480]	motile	yes	85.917	no
[Ref.: #69480]	glucose-ferment	no	89.442	no

Availability in culture collections External links

[Ref.: #21739]

Culture collection no.

DSM 22398, CGMCC 1.10137

[Ref.: #89275]

SI-ID 407313

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoxanthomonas jiangsuensis sp. nov., a DDT-degrading bacterium isolated from a long-term DDT-polluted soil.	Wang GL, Bi M, Liang B, Jiang JD, Li SP	Curr Microbiol	10.1007/s00284-011-9925-1	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21739

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22398

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89275

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407313.1 )

* These data were automatically processed and therefore are not curated

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Pseudoxanthomonas jiangsuensis strain DSM 22398

Pseudoxanthomonas jiangsuensis strain DSM 22398

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