Name: Pseudomonas nitroreducens 926
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13076

Type strain:

Species: Pseudomonas nitroreducens

Strain Designation: 926

Culture col. no.: DSM 1650, ATCC 13867, CIP 104375, DSM 50405, NCIB 9496, CCUG 1783, IAM 12573, JCM 20650, IFO 13302, NBRC 13302, NCIMB 9496

Strain history: IAM 12573 <-- IFO 13302 ("Pseudomonas denitrificans") <-- Kyoto Univ. <-- ATCC 13867 <-- R. Hugh 926 <-- C. C. Delwiche.

NCBI tax ID(s): 46680 (species)

SI-ID 4266

LMG 7983, ATCC 13867, DSM 1650, DSM 50405, NCIMB 9496, NCIB 9496, CCUG 1783, CIP 104375, IAM12573, IFO 13302, LMD 84.60, CCRC 14386, NBRC 13302, BCRC 14386, CCT 5425, NBIMCC 1625, JCM 20650

Other strains from Pseudomonas nitroreducens

P. nitroreducens KS 0050, P-6, DSM 14399, ATCC 33634, ... (type strain)
P. nitroreducens HBP1, CCUG 54620, DSM 8897
P. nitroreducens HBP1 Prp, DSM 8899
P. nitroreducens DSM 9128, ATCC 27162, CCUG 54930, ...
P. nitroreducens IpA-1, CCUG 51655, DSM 17553, ATCC ...
P. nitroreducens TA12-C, DSM 23662
P. nitroreducens CCUG 30561
P. nitroreducens CCUG 50378 A
P. nitroreducens JCM 20557, IAM 12407

Section

Pseudomonas nitroreducens 926 is an aerobe, mesophilic, motile bacterium of the family Pseudomonadaceae.

motile
aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas nitroreducens**
	Full Scientific Name (LPSN)	Pseudomonas nitroreducens Iizuka and Komagata 1964 (Approved Lists 1980)

	Synonym	Pseudomonas nitritireducens
	Synonym	Pseudomonas multiresinivorans

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #69480]	Motility	yes Confidence in %96.533

Information on culture and growth conditions Culture and growth conditions

[Ref.: #613]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #613]

Culture medium growth

[Ref.: #613]

Culture medium link

Medium recipe at MediaDive

[Ref.: #613]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #613]	growth	28 °C
[Ref.: #44422]	growth	30-37 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #613]	Temperature range	mesophilic
[Ref.: #44422]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44422]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.97

[Ref.: #613]

Name of produced compound

poly(ß-hydroxyalkanoic acids)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44422]

Fatty acid	Percentage	ECL
C16:0	30.6	16
C16:1 ω7c	21.6	15.819
C18:1 ω7c /12t/9t	20.5	17.824
C12:0 2OH	5.6	13.178
C17:0 CYCLO	4.7	16.888
C12:0	4.4	12
C12:0 3OH	3.7	13.455
C10:0 3OH	3.5	11.423
C14:0	3.2	14
C15:0	0.7	15
C18:2 ω6,9c/C18:0 ANTE	0.4	17.724
C19:0 CYCLO ω8c	0.4	18.9
C18:0	0.2	18
C17:0	0.2	17
C18:1 ω9c	0.2	17.769

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #613]	25102	+	-	-	+	-	+	-	-	+	-	-	-	-	-	+	+	+/-	+	+	-	+
[Ref.: #44422]	7337	+	-	-	+	-	-	-	-	+	-	-	-	-	-	+	+	+	+	+	-	+
[Ref.: #613]	23126	+	-	-	+	-	-	-	-	+	-	-	-	-	-	+	+	+	+	+	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #44422]	3690	-	+	-	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #613]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas sp. ATCC 13867	GCA_000349845	complete	GenBank	1294143 tax ID	*
[Ref.: #66792]	Pseudomonas sp. ATCC 13867	GCA_003417565	contig	GenBank	1294143 tax ID	*
[Ref.: #66792]	Pseudomonas denitrificans ATCC 13867	1294143.3	complete	PATRIC	1294143 tax ID	*
[Ref.: #66792]	Pseudomonas sp. ATCC 13867	1294143.12	wgs	PATRIC	1294143 tax ID	*
[Ref.: #66792]	Pseudomonas denitrificans ATCC 13867	2540341139	complete	JGI IMG/M	1294143 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudomonas denitrificans ATCC 13867 PATRIC: 1294143.3
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas sp. ATCC 13867 ATCC 13867 NCBI: GCA_000349845.1
[Ref.: #69480]	motile	yes	90.712	no
[Ref.: #69480]	flagellated	yes	86.086	no
[Ref.: #69480]	gram-positive	no	98.489	no
[Ref.: #69480]	anaerobic	no	97.785	yes
[Ref.: #69480]	aerobic	yes	86.1	no
[Ref.: #69480]	halophile	no	85.023	no
[Ref.: #69480]	spore-forming	no	94.699	no
[Ref.: #69480]	glucose-util	yes	87.097	no
[Ref.: #69480]	thermophile	no	99.763	yes
[Ref.: #69480]	glucose-ferment	no	90.094	yes

Availability in culture collections External links

[Ref.: #613]

Culture collection no.

DSM 1650, ATCC 13867, CIP 104375, DSM 50405, NCIB 9496, CCUG 1783, IAM 12573, JCM 20650, IFO 13302, NBRC 13302, NCIMB 9496

[Ref.: #82286]

SI-ID 4266

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Shift of Choline/Betaine Pathway in Recombinant Pseudomonas for Cobalamin Biosynthesis and Abiotic Stress Protection.	Balabanova L, Pentekhina I, Nedashkovskaya O, Degtyarenko A, Grigorchuk V, Yugay Y, Vasyutkina E, Kudinova O, Seitkalieva A, Slepchenko L, Son O, Tekutyeva L, Shkryl Y	Int J Mol Sci	10.3390/ijms232213934	2022	*

References

#613	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1650

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44422 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 1783

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82286

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4266.1 )

* These data were automatically processed and therefore are not curated

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Pseudomonas denitrificans ATCC 13867

Pseudomonas sp. ATCC 13867 ATCC 13867

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