Name: Photobacterium sanctipauli DSM 100436
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130750

Type strain:

Species: Photobacterium sanctipauli

Culture col. no.: DSM 100436, CAIM 1892, LMG 27910

Strain history: <- CAIM <- A. P. B. Moreira et al., Institute of Biology, Federal University of Rio de Janeiro

NCBI tax ID(s): 1342794 (species)

SI-ID 403282

DSM 100436

Section

Photobacterium sanctipauli DSM 100436 is a mesophilic, motile bacterium that was isolated from bleached coral Madracis decactis.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Photobacterium*
	Species	**Photobacterium sanctipauli**
	Full Scientific Name (LPSN)	Photobacterium sanctipauli Moreira et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.962

[Ref.: #69480]	Motility	yes Confidence in %96.636

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21728]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #21728]

Culture medium growth

[Ref.: #21728]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21728]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21728]			growth	28 °C

[Ref.: #21728]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.943

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #21728]	23321	-	-	+	+	-	+	-	+	+	-	+	+	-	-	+	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21728]	Sample type/isolated from	bleached coral Madracis decactis
[Ref.: #21728]	Host species	Madracis decactis
[Ref.: #21728]	Geographic location (country and/or sea, region)	St Peter and St Paul Archipelago, Mid-Atlantic Ridge
[Ref.: #21728]	Country	Brazil
[Ref.: #21728]	Country ISO 3 Code	BRA
[Ref.: #21728]	Continent	Middle and South America
[Ref.: #21728]	Geographic location	0.9333°/-29.3667°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Cnidaria (Corals)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC751088 (>99% sequence identity) for Photobacterium sanctipauli subclade from Microbeatlas

Aquatic Samples	121
Soil Samples
Animal Samples	19
Plant Samples
Total Samples	140

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21728]	Photobacterium sanctipauli strain A-394 16S ribosomal RNA gene, partial sequence	KC751088	1505	ENA	1342794 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Photobacterium sanctipauli DSM 100436	GCA_003026495	contig	GenBank	1342794 tax ID	*
[Ref.: #66792]	Photobacterium sanctipauli strain DSM 100436	1342794.7	wgs	PATRIC	1342794 tax ID	*
[Ref.: #66792]	Photobacterium sanctipauli DSM 100436	2902482210	draft	JGI IMG/M	1342794 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Photobacterium sanctipauli strain DSM 100436 PATRIC: 1342794.7
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Photobacterium sanctipauli strain DSM 100436 PATRIC: 1342794.7
[Ref.: #69480]	motile	yes	90.985	no
[Ref.: #69480]	gram-positive	no	98.696	no
[Ref.: #69480]	anaerobic	no	96.232	no
[Ref.: #69480]	halophile	no	58.673	no
[Ref.: #69480]	spore-forming	no	93.427	no
[Ref.: #69480]	thermophile	no	99.801	yes
[Ref.: #69480]	glucose-util	yes	90.428	no
[Ref.: #69480]	aerobic	yes	74.249	no
[Ref.: #69480]	flagellated	yes	80.496	no
[Ref.: #69480]	glucose-ferment	yes	86.196	yes

Availability in culture collections External links

[Ref.: #21728]

Culture collection no.

DSM 100436, CAIM 1892, LMG 27910

[Ref.: #89247]

SI-ID 403282

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Photobacterium sanctipauli sp. nov. isolated from bleached Madracis decactis (Scleractinia) in the St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil.	Moreira AP, Duytschaever G, Chimetto Tonon LA, Froes AM, de Oliveira LS, Amado-Filho GM, Francini-Filho RB, De Vos P, Swings J, Thompson CC, Thompson FL	PeerJ	10.7717/peerj.427	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21728

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100436

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89247

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403282.1 )

* These data were automatically processed and therefore are not curated

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Photobacterium sanctipauli strain DSM 100436

Photobacterium sanctipauli strain DSM 100436

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