Name: Pyrobaculum ferrireducens 1860
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130743

Type strain:

Species: Pyrobaculum ferrireducens

Strain Designation: 1860

Culture col. no.: DSM 28942, VKM B-2856

Strain history: <- G. Slobodkina, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; 1860 <- A. Slobodkin and G. Slobodkina {2009}

NCBI tax ID(s): 1104324 (species)

SI-ID 404802

DSM 28942

Section

Pyrobaculum ferrireducens 1860 is an anaerobe, hyperthermophilic, Gram-negative archaeon that was isolated from sediment from the bottom of a terrestrial hot spring.

Gram-negative
anaerobe
hyperthermophilic
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Thermoproteales*
	Family	*Thermoproteaceae*
	Genus	*Pyrobaculum*
	Species	**Pyrobaculum ferrireducens**
	Full Scientific Name (LPSN)	Pyrobaculum ferrireducens Slobodkina et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.974

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21926]

Culture medium

PYROBACULUM FERRIREDUCENS MEDIUM (DSMZ Medium 1579)

[Ref.: #21926]

Culture medium growth

[Ref.: #21926]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21926]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21926]			growth	90 °C

[Ref.: #21926]	Temperature range	hyperthermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.999

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21926]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %94.964

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.972

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21926]	Sample type/isolated from	sediment from the bottom of a terrestrial hot spring
[Ref.: #21926]	Geographic location (country and/or sea, region)	Kamchatka, Uzon Kaldera, Kronotsky Nature Reserve, 'Fumarolnoye' field, (54° 30.115' N 159° 59.279' E, elevation 656 m)
[Ref.: #21926]	Country	Russia
[Ref.: #21926]	Country ISO 3 Code	RUS
[Ref.: #21926]	Continent	Asia
[Ref.: #21926]	Geographic location	54.5019°/159.5020°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21926]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pyrobaculum ferrireducens 1860	GCA_000234805	complete	GenBank	1104324 tax ID	*
[Ref.: #66792]	Pyrobaculum ferrireducens 1860	2511231117	complete	JGI IMG/M	1104324 tax ID	*

[Ref.: #21926]

GC-content

56.97 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pyrobaculum ferrireducens 1860 NCBI: GCA_000234805.1
[Ref.: #69481]	spore-forming	yes	81	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pyrobaculum ferrireducens 1860 NCBI: GCA_000234805.1
[Ref.: #69480]	motile	no	76.906	no
[Ref.: #69480]	flagellated	no	96.828	no
[Ref.: #69480]	gram-positive	no	97.003	no
[Ref.: #69480]	anaerobic	yes	93.124	yes
[Ref.: #69480]	aerobic	no	87.865	no
[Ref.: #69480]	halophile	no	77.134	no
[Ref.: #69480]	spore-forming	no	96.381	no
[Ref.: #69480]	thermophile	yes	100	no
[Ref.: #69480]	glucose-util	yes	77.259	no
[Ref.: #69480]	glucose-ferment	no	80.418	no

Availability in culture collections External links

[Ref.: #21926]

Culture collection no.

DSM 28942, VKM B-2856

[Ref.: #89243]

SI-ID 404802

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pyrobaculum ferrireducens sp. nov., a hyperthermophilic Fe(III)-, selenate- and arsenate-reducing crenarchaeon isolated from a hot spring.	Slobodkina GB, Lebedinsky AV, Chernyh NA, Bonch-Osmolovskaya EA, Slobodkin AI	Int J Syst Evol Microbiol	10.1099/ijs.0.000027	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21926

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28942

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89243

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404802.1 )

* These data were automatically processed and therefore are not curated

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