Planobispora takensis (DSM 46863, BCC 48396, NBRC 109077)

Name: Planobispora takensis (DSM 46863, BCC 48396, NBRC 109077)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130732

Type strain

Strain Designation A-T 7458

Culture col. no. DSM 46863 BCC 48396 NBRC 109077 A-T 7458

NCBI tax ID(s) 1367882

Special Collections DSMZ

History <- C Suriyachadkun, BIOTEC Culture Collection (BCC); BCC 48396 <- S. Chunhametha

Links

Planobispora takensis A-T 7458 is a bacterium that was isolated from soil collected from hill evergreen forest.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 404584

NBRC 109077,DSM 46863

@ref 20215

Last LPSN update 2026-02-09 11:31:17

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Planobispora

Species Planobispora takensis

Full scientific name Planobispora takensis Ngaemthao et al. 2014

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.4

Multimedia

@ref:	21729
multimedia content:	DSM_46863.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46863.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21729	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
21729	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21729	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21729	soil collected from hill evergreen forest	Tak province	Thailand	THA	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21729	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1686319v1 assembly for Planobispora takensis NBRC 109077	contig	GCA_016863195	1367882.3	2994793337	1367882	40.57

GC content

21729

GC-content (mol%)72.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Planobispora takensis NBRC 109077
NCBI: GCA_016863195

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	69.90	no
125439	motility	BacteriaNetⓘ	no	80.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Planobispora takensis strain NBRC 109077
PATRIC: 1367882.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	84.14	no
125438	anaerobic	anaerobicⓘ	no	92.79	no
125438	spore-forming	spore-formingⓘ	yes	82.46	no
125438	aerobic	aerobicⓘ	yes	85.48	no
125438	thermophilic	thermophileⓘ	no	95.88	yes
125438	flagellated	motile2+ⓘ	no	57.83	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Planobispora takensis sp. nov., isolated from soil.	Ngaemthao W, Suriyachadkun C, Chunhametha S, Niemhom N, Thawai C, Sanglier JJ	Int J Syst Evol Microbiol	10.1099/ijs.0.057968-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21729	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46863
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Planobispora takensis (DSM 46863, BCC 48396, NBRC 109077)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016863195

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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