Name: Microbispora bryophytorum NEAU-TX2-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130731

Type strain:

Species: Microbispora bryophytorum

Strain Designation: NEAU-TX2-2

Culture col. no.: DSM 46710, CGMCC 4.7138, JCM 31772

Strain history: CGMCC 4.7138 <-- C. Liu; Northeast Agric. Univ., China; NEAU-TX2-2.

NCBI tax ID(s): 1460882 (species)

SI-ID 404685

DSM 46710

Section

Microbispora bryophytorum NEAU-TX2-2 is a spore-forming, mesophilic bacterium that was isolated from moss.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Microbispora*
	Species	**Microbispora bryophytorum**
	Full Scientific Name (LPSN)	Microbispora bryophytorum Li et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.664

Multimedia content

[Ref.: #21669]

Caption:

Medium 65 28°C

[Ref.: #21669]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21669]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #21669]

Culture medium growth

[Ref.: #21669]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21669]

Culture medium composition

expand / minimize

[Ref.: #21669]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #21669]

Culture medium growth

[Ref.: #21669]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21669]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21669]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #21669]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %97
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(H₂), MK-9(H₀), MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21669]	Sample type/isolated from	moss
[Ref.: #21669]	Geographic location (country and/or sea, region)	Heilongjiang Province, Wuchang (44°15' N 127°54' E)
[Ref.: #21669]	Country	China
[Ref.: #21669]	Country ISO 3 Code	CHN
[Ref.: #21669]	Continent	Asia
[Ref.: #21669]	Geographic location	44.2500°/127.9000°

[Ref.: #67770]	Sample type/isolated from	Moss from Wuchang
[Ref.: #67770]	Geographic location (country and/or sea, region)	Heilongjiang Province, north China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Moss

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF886293 (>99% sequence identity) for Microbispora from Microbeatlas

Aquatic Samples	9
Soil Samples	241
Animal Samples	13
Plant Samples	43
Total Samples	306

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21669]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21669]	Microbispora bryophytorum strain NEAU-TX2-2 16S ribosomal RNA gene, partial sequence	KF886293	1513	ENA	1460882 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Microbispora bryophytorum DSM 46710	GCA_006874465	scaffold	GenBank	1460882 tax ID
[Ref.: #66792]	Microbispora bryophytorum CGMCC 4.7138	GCA_014645855	scaffold	GenBank	1460882 tax ID	*
[Ref.: #66792]	Microbispora bryophytorum NEAU-TX2-2	GCA_014712735	contig	GenBank	1460882 tax ID	*
[Ref.: #66792]	Microbispora bryophytorum strain CGMCC 4.7138	1460882.4	wgs	PATRIC	1460882 tax ID	*
[Ref.: #66792]	Microbispora bryophytorum strain DSM 46710	1460882.3	wgs	PATRIC	1460882 tax ID	*
[Ref.: #66792]	Microbispora bryophytorum DSM 46710	2891475856	draft	JGI IMG/M	1460882 tax ID	*

[Ref.: #21669]	GC-content	70.4 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	70.2-70.6 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbispora bryophytorum CGMCC 4.7138 NCBI: GCA_014645855.1
[Ref.: #69481]	spore-forming	yes	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbispora bryophytorum CGMCC 4.7138 NCBI: GCA_014645855.1
[Ref.: #69480]	flagellated	no	98.164	no
[Ref.: #69480]	gram-positive	yes	91.413	no
[Ref.: #69480]	anaerobic	no	99.19	no
[Ref.: #69480]	aerobic	yes	92.662	no
[Ref.: #69480]	halophile	no	93.037	no
[Ref.: #69480]	spore-forming	yes	95.166	no
[Ref.: #69480]	glucose-util	yes	90.002	no
[Ref.: #69480]	thermophile	no	98.122	yes
[Ref.: #69480]	motile	no	93.387	no
[Ref.: #69480]	glucose-ferment	no	93.324	no

Availability in culture collections External links

[Ref.: #21669]

Culture collection no.

DSM 46710, CGMCC 4.7138, JCM 31772

[Ref.: #89234]

SI-ID 404685

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbispora sitophila sp. nov., a novel actinobacterium isolated from rhizosphere soil of wheat (Triticum aestivum L.).	Guo L, Li Z, Xu X, Pang Q, Zhao J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004684	2021	*
Phylogeny	Microbispora clausenae sp. nov., an endophytic actinobacterium isolated from the surface-sterilized stem of a Thai medicinal plant, Clausena excavala Burm. f.	Kaewkla O, Koomsiri W, Thamchaipenet A, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijsem.0.004518	2020	*
Phylogeny	Microbispora cellulosiformans sp. nov., a novel actinomycete with cellulase activity isolated from soil in the cold region.	Gong X, Xiang W, Cao X, Yu Y, Hao Y, Li L, Wang Q, Zou H, Qian C	Antonie Van Leeuwenhoek	10.1007/s10482-020-01477-4	2020	*
Phylogeny	Microbispora fusca sp. nov., a novel actinomycete isolated from the ear of wheat (Triticum aestivum L.).	Zhao J, Yu B, Han C, Cao P, Yu Z, Ju H, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003725	2020	*
Phylogeny	Microbispora tritici sp. nov., a novel actinomycete isolated from a root of wheat (Triticum aestivum L.).	Han C, Zhao J, Yu B, Shi H, Zhang C, Guo X, Xiang W, Wang X	Antonie Van Leeuwenhoek	10.1007/s10482-019-01246-y	2019	*
Phylogeny	Microbispora triticiradicis sp. nov., a novel actinomycete isolated from the root of wheat (Triticum aestivum L.).	Han C, Tian Y, Zhao J, Yu Z, Jiang S, Guo X, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003040	2018	*
Phylogeny	Microbispora camponoti sp. nov., a novel actinomycete isolated from the cuticle of Camponotus japonicus Mayr.	Han C, Liu C, Zhao J, Guo L, Lu C, Li J, Jia F, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0625-x	2015	*
Phylogeny	Microbispora bryophytorum sp. nov., an actinomycete isolated from moss (Bryophyta).	Li C, Zhang Y, Liu C, Wang H, Zhao J, Li L, Zhang Z, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijs.0.000095	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21669

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46710

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89234

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404685.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Microbispora bryophytorum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Microbispora bryophytorum CGMCC 4.7138

Microbispora bryophytorum CGMCC 4.7138

Change proposal

Change proposal