Name: Streptomyces leeuwenhoekii C34
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130720

Type strain:

Species: Streptomyces leeuwenhoekii

Strain Designation: C34

Culture col. no.: DSM 42122, NRRL B-24963

Strain history: <- M. Goodfellow, Newcastle University; C34 <- C. K. Okoro

NCBI tax ID(s): 1437453 (species)

Section

Streptomyces leeuwenhoekii C34 is a spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from hyper-arid desert soil.

antibiotic compound production
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces leeuwenhoekii**
	Full Scientific Name (LPSN)	Streptomyces leeuwenhoekii Busarakam et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.028

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21953]			growth	28 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #21953]	Name of produced compound	chaxalactins
[Ref.: #21953]	Name of produced compound	chaxamycins

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21953]	Sample type/isolated from	hyper-arid desert soil
[Ref.: #21953]	Geographic location (country and/or sea, region)	Chaxa de Laguna, Salar de Atacama
[Ref.: #21953]	Country	Chile
[Ref.: #21953]	Country ISO 3 Code	CHL
[Ref.: #21953]	Continent	Middle and South America
[Ref.: #21953]	Geographic location	-23.2833°/-68.1667°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil
#Climate	#Hot	#Arid

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21953]	Streptomyces leeuwenhoekii 16S ribosomal RNA gene, partial sequence	KF733382	1416	ENA	1437453 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces leeuwenhoekii type strain (C34 = DSM 42122 = NRRL B-24963)	GCA_001013905	complete	GenBank	1437453 tax ID	*
[Ref.: #66792]	Streptomyces leeuwenhoekii C34	GCA_000696595	scaffold	GenBank	1437453 tax ID	*
[Ref.: #66792]	Streptomyces leeuwenhoekii strain C34 (= DSM 42122 = NRRL B-24963) strain C34 (= DSM 42122 = NRRL B-24963) strain type strain (C34 = DSM 42122 = NRRL B-24963)	1437453.10	plasmid	PATRIC	1437453 tax ID	*
[Ref.: #66792]	Streptomyces leeuwenhoekii strain C34 (= DSM 42122 = NRRL B-24963) strain C34 (= DSM 42122 = NRRL B-24963) strain type strain (C34 = DSM 42122 = NRRL B-24963)	1437453.11	plasmid	PATRIC	1437453 tax ID	*
[Ref.: #66792]	Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963)	1437453.6	complete	PATRIC	1437453 tax ID	*
[Ref.: #66792]	Streptomyces leeuwenhoekii DSM 42122	2872922060	complete	JGI IMG/M	1437453 tax ID	*

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GC-content

72.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces leeuwenhoekii C34 (= DSM 42122 = NRRL B-24963) NCBI: GCA_001013905.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces leeuwenhoekii C34 (= DSM 42122 = NRRL B-24963) NCBI: GCA_001013905.1
[Ref.: #69480]	motile	no	93.776	no
[Ref.: #69480]	flagellated	no	97.899	no
[Ref.: #69480]	gram-positive	yes	91.098	no
[Ref.: #69480]	anaerobic	no	99.39	no
[Ref.: #69480]	aerobic	yes	93.87	no
[Ref.: #69480]	halophile	no	91.883	no
[Ref.: #69480]	spore-forming	yes	97.528	no
[Ref.: #69480]	thermophile	no	94.991	no
[Ref.: #69480]	glucose-util	yes	90.703	no
[Ref.: #69480]	glucose-ferment	no	90.648	no

Availability in culture collections External links

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Culture collection no.

DSM 42122, NRRL B-24963

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Deciphering a Cyclodipeptide Synthase Pathway Encoding Prenylated Indole Alkaloids in Streptomyces leeuwenhoekii.	Zhang Y, Yao T, Jiang Y, Li H, Yuan W, Li W	Appl Environ Microbiol	10.1128/AEM.02525-20	2021	*
Phylogeny	Streptomyces alkalithermotolerans sp. nov., a novel alkaliphilic and thermotolerant actinomycete isolated from a soda lake.	Sultanpuram VR, Mothe T, Mohammed F	Antonie Van Leeuwenhoek	10.1007/s10482-014-0332-z	2014	*
Phylogeny	Streptomyces leeuwenhoekii sp. nov., the producer of chaxalactins and chaxamycins, forms a distinct branch in Streptomyces gene trees.	Busarakam K, Bull AT, Girard G, Labeda DP, van Wezel GP, Goodfellow M	Antonie Van Leeuwenhoek	10.1007/s10482-014-0139-y	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21953

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42122

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Streptomyces leeuwenhoekii C34 (= DSM 42122 = NRRL B-24963)

Streptomyces leeuwenhoekii C34 (= DSM 42122 = NRRL B-24963)

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