Name: Streptomyces halophytocola DSM 42134
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130719

Type strain:

Species: Streptomyces halophytocola

Culture col. no.: DSM 42134, KCTC 19890, NBRC 108770, KLBMP 1284

Strain history: <- J. Nakagawa; NBRC 108770 <- S. Qin, Xuzhou Normal Univ.; KLBMP 1284

NCBI tax ID(s): 1181887 (species)

SI-ID 397539

DSM 42134

Section

Streptomyces halophytocola DSM 42134 is an aerobe, spore-forming, mesophilic bacterium that was isolated from surface-sterilized stems of a coastal halophyte Tamarix chinensis Lour.

Gram-positive
spiral-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces halophytocola**
	Full Scientific Name (LPSN)	Streptomyces halophytocola Qin et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30917]	Gram stain	positive

[Ref.: #30917]	Cell shape	spiral-shaped

[Ref.: #30917]

Pigment production

yes

Multimedia content

[Ref.: #21952]

Caption:

Medium 65 28°C

[Ref.: #21952]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21952]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #21952]

Culture medium growth

[Ref.: #21952]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21952]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21952]	growth	28 °C
[Ref.: #30917]	growth	15-37 °C
[Ref.: #30917]	optimum	28 °C

[Ref.: #21952]	Temperature range	mesophilic
[Ref.: #30917]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30917]			optimum	7.25
[Ref.: #30917]			growth	4.0-13.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30917]

Oxygen tolerance

aerobe

[Ref.: #30917]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30917]		NaCl		growth	0-10	%
[Ref.: #30917]		NaCl		optimum	3	%

[Ref.: #30917]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30917]	arginine ChEBI	+	carbon source
[Ref.: #30917]	glucose ChEBI	+	carbon source
[Ref.: #30917]	rhamnose ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21952]	Sample type/isolated from	surface-sterilized stems of a coastal halophyte Tamarix chinensis Lour
[Ref.: #21952]	Geographic location (country and/or sea, region)	Jiangsu province, Nantong
[Ref.: #21952]	Country	China
[Ref.: #21952]	Country ISO 3 Code	CHN
[Ref.: #21952]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Stem (Branch)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JQ819259 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	129
Soil Samples	626
Animal Samples	1133
Plant Samples	216
Total Samples	2104

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21952]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21952]	Streptomyces halophytocola strain KLBMP1284 16S ribosomal RNA gene, partial sequence	JQ819259	1453	ENA	1181887 tax ID

[Ref.: #21952]

GC-content

71.6 mol%

Availability in culture collections External links

[Ref.: #21952]

Culture collection no.

DSM 42134, KCTC 19890, NBRC 108770, KLBMP 1284

[Ref.: #89226]

SI-ID 397539

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces xiaopingdaonensis sp. nov., a novel marine actinomycete isolated from the sediment of Xiaopingdao in Dalian, China.	Chen C, Feng WW, Qin S, Zhao XQ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0347-5	2014	*
Phylogeny	Streptomyces halophytocola sp. nov., an endophytic actinomycete isolated from the surface-sterilized stems of a coastal halophyte Tamarix chinensis Lour.	Qin S, Bian GK, Tamura T, Zhang YJ, Zhang WD, Cao CL, Jiang JH	Int J Syst Evol Microbiol	10.1099/ijs.0.047456-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21952

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42134

#30917

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27247 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89226

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397539.1 )

#27247

IJSEM 2770 2013 ( DOI 10.1099/ijs.0.047456-0 , PubMed 23291896 )

* These data were automatically processed and therefore are not curated

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