Name: Staphylococcus capitis G29
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130691

Type strain:

Species: Staphylococcus capitis

Strain Designation: G29

Culture col. no.: DSM 31028

Strain history: <- European Space Agency, Noordwijk, Netherlands <- A. Auerbach, Univ. Regensburg, Germany; G29

NCBI tax ID(s): 29388 (species)

SI-ID 399475

DSM 31028

Special Collections

DSMZ
ESA

Other strains from Staphylococcus capitis

Section

When using BacDive for research please cite our paper

Staphylococcus capitis G29 is a mesophilic bacterium that was isolated from cleanroom, wipe sample.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Staphylococcus*
	Species	**Staphylococcus capitis**
	Full Scientific Name (LPSN)	Staphylococcus capitis Kloos and Schleifer 1975 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21803]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #21803]

Culture medium growth

[Ref.: #21803]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21803]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21803]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21803]	Sample type/isolated from	cleanroom, wipe sample
[Ref.: #21803]	Geographic location (country and/or sea, region)	Göttingen, MPS
[Ref.: #21803]	Country	Germany
[Ref.: #21803]	Country ISO 3 Code	DEU
[Ref.: #21803]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered

#Built environment

#Clean room

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21803]	Pathogenicity (human)	yes, in single cases
[Ref.: #21803]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Staphylococcus capitis subsp. capitis DSM 31028	GCA_025370135	scaffold	GenBank ENA	72758 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Staphylococcus capitis subsp. capitis DSM 31028 NCBI: GCA_025370135.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	87.756	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	99.461	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	64.154	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	76.613	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.292	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	81.054	no

Availability in culture collections External links

[Ref.: #21803]

Culture collection no.

DSM 31028

[Ref.: #89198]

SI-ID 399475

Literature:

Topic	Title	Authors	Journal	DOI	Year
Stress	Phenotypic and genomic assessment of the potential threat of human spaceflight-relevant Staphylococcus capitis isolates under stress conditions.	Siems K, Runzheimer K, Rehm A, Schwengers O, Heidler von Heilborn D, Kaser L, Arndt F, Neidhofer C, Mengel JP, Parcina M, Lipski A, Hain T, Moeller R	Front Microbiol	10.3389/fmicb.2022.1007143	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21803

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 31028

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89198

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399475.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

* These data were automatically processed and therefore are not curated

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Staphylococcus capitis subsp. capitis DSM 31028

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